MmuINT0085588 @ mm9
Intron Retention
Gene
ENSMUSG00000041248 | Kcnj1
Description
potassium inwardly-rectifying channel, subfamily J, member 1 [Source:MGI Symbol;Acc:MGI:1927248]
Coordinates
chr9:32201570-32206779:+
Coord C1 exon
chr9:32201570-32201767
Coord A exon
chr9:32201768-32203905
Coord C2 exon
chr9:32203906-32206779
Length
2138 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCTCTCTAATGTGTTTTCAGATC
3' ss Score
10.13
Exon sequences
Seq C1 exon
TGTTGGTTTAAACCACACAACTCCACTCTTGAGTTAACCATTGAAAGCTAATGCAAGCAAGCATCATTGTGAGGCTTAAGATTCATTAAGGTGGGCCTCAAAGAAGTCGGCCTTTGCACAGACAAAACTGAACAGCACCACTCACTTGCTTTGCCCAGCATGGATGCTTCAGATCGGAGGTGTATGTGCAGAGTGCTG
Seq A exon
GTAAGTGCAGACCATCTAGGGAAGGCACTGTGGGCCCCTGCCTGCTCCTGCTTTGCCATTTGCAAGGCCAGGAAGTGAATGTTTTATTTTGCTAACACAGTAATGGAGAACCCAAACTTCCTGAGGACATGCCTTCGCTTTACAGAAACACCCTTCACCTTCAAAGTGAAGCAAACTTTAGCAGGGCGGAGGAGGGTGGAGGGTGGAGGGCGGGAAACGCTCGGAAATTAATGTTTCAGAAGTCATCTTGAGTTGTAATGTGTGATGAAGAGTGTGTGGCTTCCATGGAGAATGCTGGCCTTAGAATTGGTAATGGTGAAAGACAACCAATGAGGAGCTTCCTTATGCCTGGCCAGGAGTATCTGTCACCATCGAATATGTGTCAGGCTGCTCCTTGGTGCATATGCAGTGGACGGAAGTAGCTGGGGAAGAAGTCTTTGGCCTCTGTGCCCCACTTGGGGCTATCCTCTAGTCTGACTCTTAGGCACTTGAGATCAGAGCGGAATGGACAGAGCTCTCTTGGGCTTGTTTGGCTCTCTTGTGCAGGGCTTGTTTGGCTCTCTTGATAACTCTTGTTCTTATATTTAGAGCCTGGCCTTCACAGTTTAACACACTGCCATGGCTGTGGTTTCTTCTCCCAGCTTCCACTTCGTGCGGCCACTGTGTATGTTTACCTGGGTGAAGGCCAGGAATAAGGTGCTGAGGGCTATCACTTTTGTTTAAAATGTGTCACTAAGCTGGTTTCGCTTCCTACTTCTTATGAGCAAACACATTTCTGAAGGGGGATTTTGAGGTCTATTTTTAAAAATATCTTTGCATTTAATGAAAAAATACCACAAAGACAGTGTTAACCACAATGGACACACCTTGATTTTTTAGGGGTTGGGTGAGGCAGAGGAAGAGGTATTCTAGGCTTAAGACCCTTGAGTTTCACTGTTGTTAGTTGTTTAGGGGAAAGCCCCAACACCGTTTTGCTGGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACCCACCTGTGCTGTCTTTGATAAGAAACTGGTGATCTTGTTCTGGAGGGCTACATTCTGTTACCATGTGCTATCCCATCACACTGATGGAGAGAGCGGCAAGCACCCAGTCTGAACTCGGAGGTGGGATCGAGGAACTAGATTAAACATGGTCCCGCCTCCATAGAACATCAGTTGAAGTCAACGTGCATCGGCTTGATAGTATGGAATATCGATGACCACCCTCATTCTATGTCTGTTAGGAATCTTGGCAGACCATGGTGAATGAGTAGAAGCAGGTATGTAGAGTCCTCAGACAGAGCCTCTGAGATCACCTGGTAGGCTGTGAGCTCTGCTGAAGACAATCAAGAGGGATTTAACCAGTCCTGTCTTCAAGTGTTCTAGAGATGCACACTTTTAGGACAGGGTATTTGAGAAATGAACCAAAGAATGACTAGAATTGGTCCAGAATGAAGGTAGTGAGTTGGTGTGCCACTTCCAGCCGTGGGTTGGGTCTATGTCTTTGGAGAAGTCACTAAAACTTGTTGAGTCTTAGTGTCTTCATTTACAAAAGAAGACCTGAACTGAATCGGAATACCCCTTGATAGCAGCAAACAAGACAATTTAGTGGATATATTGATACACTGATATAATGATGAGTTTTCTTATTCAGTTACTTATTCTTATATACCACAAAAATATGAAAAGTCCTCCAGGTTTACAATATTACAAAAATTATTGTATAGCAGCAGGTTAGATTTTAACACAGACATGATTTGCACAATAATATCCAATAAATAAAAGCACAGGTTATAATGGGTCACTCCACTTTTAAGGTCCTGTGGGACAGACTGCAGTCAGGAAATTCTTGAACATATTGTCTGTTAGTAACTTTCCACTTGGTGTCTTTCCCATTTTCTATGTGACATAGAGGCTATGTATGGTTTATTCTGGCATCCAGAACAAATGACTTGGTTTGTGTAAATGATTAACAAGCCTGATAATTTAGAATTTTTCTTTTCAGAGGTATTTGGTTCTGTACATGACTCACTTACTTTACCACGGTGACAACTATAATCTTACCAACCTCTCTAATGTGTTTTCAG
Seq C2 exon
ATCAGGGCACTGACAGAAAGGATGTTCAAACATCTTCGAAGATGGTTTGTCACTCACATATTTGGGCGTTCTCGGCAACGAGCAAGGTTGGTCTCCAAAGATGGAAGGTGTAACATCGAGTTTGGCAATGTAGATGCACAGTCGAGGTTTATATTCTTTGTGGATATCTGGACAACTGTACTTGACCTGAAATGGAGGTACAAAATGACCGTGTTCATCACAGCCTTCTTGGGGAGTTGGTTTCTCTTTGGTCTCCTGTGGTATGTCGTAGCCTATGTTCATAAGGATCTCCCAGAGTTCTACCCACCTGACAACCGTACTCCTTGTGTGGAGAACATTAATGGCATGACATCAGCCTTTCTGTTTTCTCTAGAGACCCAAGTGACCATAGGTTACGGATTCAGGTTTGTGACAGAACAGTGTGCCACTGCCATTTTTCTGCTTATCTTCCAGTCTATTCTTGGAGTGATCATCAATTCTTTCATGTGTGGTGCCATATTAGCCAAGATCTCTAGACCCAAAAAACGTGCAAAGACCATTACATTCAGCAAGAATGCGGTGATCAGCAAACGTGGGGGGAAGCTCTGTCTCCTCATCCGAGTAGCAAATCTTAGGAAAAGCCTTCTGATTGGCAGTCACATATATGGTAAGCTTCTGAAGACTACCATCACACCTGAAGGAGAGACCATTATTTTGGATCAGACCAATATAAACTTTGTAGTTGATGCTGGCAATGAAAATTTGTTCTTCATTTCCCCACTGACAATCTACCACATTATTGACCACAACAGCCCTTTCTTCCACATGGCGGCAGAAACTCTTTCCCAACAGGACTTCGAGTTGGTTGTCTTTTTAGATGGCACAGTAGAATCCACCAGTGCAACCTGCCAAGTCCGCACATCATACATCCCAGAAGAGGTGCTTTGGGGTTACCGTTTTGTTCCCATCGTATCCAAGACCAAGGAAGGGAAATACCGAGTGGATTTCCATAACTTTGGTAAGACGGTGGAAGTGGAGACCCCTCATTGTGCCATGTGCCTCTATAATGAGAAAGATGCCAGGGCCAGGATGAAGAGAGGCTATGACAACCCTAACTTTGTCTTGTCAGAAGTTGATGAAACAGACGACACCCAAATGTAGCAGTGGCTTTTCTACCTACAAAGAGTCTCTCAAGGACCTAAGTGCTGGCTGTGTTCAGAAGCATCCTGCAGTTGGGGGACTGAAAGCAGGATGAGAACCCAAGAAGTCTACCAGCAGAGTCACCCCCTCAGCCCCATGGCTATGATTCTAGAAGACTCGTAGCTCTAAAGTCTGCAGCAGTAAGCATACGGTGGAAGCATGTGAATGAACCTGGCGTGTGGAAGCCAAAAGGAGCTCACTTGGATCTTCACTCTGACTGTGTAAGCTCGTACAGTGTTGATGGAAACAAAGTCATCCATTGACATGTACTGGAGAAAAGTTAGGAGCTTTAGAAAACTTCAGGAGCTAGCCATATTTCCTGTTTGATTCTATGGATGAGAAAGATATCACATTTTATCTTAAAGTAGACTTTTATCAACGGAAAATCTGTCTTCTGAGTTGGGAAGTGAGCCAACCAGTCACTGACAATAAGAGCCTGTCATACACAGAATCACTAAAGGCTCTAACTTCTTAAGCTCTGCTGTTTGAAGCCTTTGTCTGAGTCTGGGTCCATGTTTCAGAAGGGGTAAGGTGGGCATCCAGTGACTGCACCTTTCTCAACCCAAGGTACAGAAGAACAGAAAGCCTCAACCAATTTCATAACTAACTCAGACGCTGCAGCCCATATAGGAATGGACCTGAATGATTTCCGGTGGTGCAATCAATGGAGGCCAAGCCCATTCCTTAGACTAAATGAACATTCTCTTGCAAAGGAGAGTGTTTGAGCTAAAAGTGTTGGTGAAGAGGCTGAAGAGATGACATTCTTTGTAAGTTCATGCTGCGCACGCATGAAGACCTGGGTCTGAACCTCCAACAATCACATACAAAGCTTGACTTAGTAGGATGCTCCCCCTCCCCAATCCTAGTACTGGGGAGGTAGGGATAGGAGGATGTCTCAAGTTTTCTGGACAGCTGAATGGGTGAGGTACCAGTTCAGGGAGAGACTACAAAAATAAGGTGAAGGGGCTGGCGGGAAGACTCTGGTTAAAAGCACCGTGGCTGATCTTCCAGAGAACCTAGGTTTGGTTCCTGGCACAGTACTTCATAACTATCTATAACTCCAGTTTCAGGGCATCTGATGCTCTTTTCTGGCCCCTATGAGCACCAGGTGCACATGCGAGCAAAACACTATACACATACGATTAAAAAGATAAGGTAGAGAATGACTGAAGAAGAAATCTTACGTCAACTTCTGATCTACACACACACACACACACACACACACACACACACACAGAGCATAGTGATGTTTGTTTCAGTATTCAGTGGGTAGGTTATAGGGCCACAGGTCTGGTAAAAGAGGTTTTATTCCTTCCTCTCTCAAGATGGTGCTGAGGACTGGGAAAGCAGTCAGCCTGGAGTGTGTATGATGCTAACACCGAATGGTTCTTGTGTTTCTCTGCCTAGTGGTTGAACTGCAATTCTAGGTATGAAGGAGAAAGGAACGAGATACAGCACCACAGTCAGGATGCTGCTGCTTTCTTGTCTCTAAAGGCCATCCCTACATCTTCCAAAGGGAACAAGTTAGCAGGAGAATTTACTTCGGAGGAAGGTTCTAATGTCTTGTTTGTTCATTTCCACATCTGCATCATTCTGATTTCACCTTGGGGGAAAAAAAGTAGAATTCAAAGCTGTTCAAAAATCAAAATATCATTTTAGTATGTGATTAATAAATTTCTGAAACTGTATGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041248-Kcnj1:NM_001168354:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: