HsaINT0084737 @ hg19
Intron Retention
Gene
ENSG00000162687 | KCNT2
Description
potassium channel, subfamily T, member 2 [Source:HGNC Symbol;Acc:18866]
Coordinates
chr1:196285022-196288685:-
Coord C1 exon
chr1:196288614-196288685
Coord A exon
chr1:196285157-196288613
Coord C2 exon
chr1:196285022-196285156
Length
3457 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TCTGTTGATTTTTATCAAAGCCT
3' ss Score
2.98
Exon sequences
Seq C1 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq A exon
GTAGGTGACAAAATCTTTGGCACACTAACTAGTGTAGTGTCCTGTGGTTTGTCATGTGCTGTGCCTTGTTACTGCATGATGAGTGTAATTTGCCGTGTCAGTATTGCAAATATGATATATTTTGCATGTAGAGCTTATGTTCTCGTGTTATACATCTTGTATTAAACTTTCTGAGTAGTAATCTATTGTTGAATTAAAACAAATCTTGCTGCATGTCAATTTTGTCAGTTTTGCTCAGTTTCTAATGCTGTTTTAGTTTTGTGTCATCTATAACAACATTATTACTATTGACATAGTGGTAGAGAAAACTAAAGTTGCAATATTGTGATGCATTGATAGCGTTACGATAACTTCTGGAAACTTTGAAATAATTTAGAAATGCTCATTTTAACTTAGATTTATAAATTGGAGCAATTCCTTTAGAGTTTACTTTGGTCACATGTCAGAGTTTATAATTTCTAAAATATTTGTTAATGAAAAGGTCATATGTGTTTAATACATTAGTAATTAAATACAAATTCTTATACATGTATTATGGTGACATTAAAAATATATATAAAAATAAAAGATCAAAACGCTAATATACTTGAAATAATATATGTTACTTTTCCACTTCTAAAAAATGTCAGCCAGAGCCTTCAAAATAAAATGCTAAAATTTACCAATTGAGAACTTTAACACTTACATTTTATCCTGTAGATGTTGAAGAAAACACAGTTTTACAACTTTGAAAGTATTTAGTGCTGTGGATACATTAAAGGTCAAACAGTCTAAAATATGATTAGCCTCCATTCTATGTTAATATAATTTACCTCATCAGTTATGATAATACTAACCAAGTAAATAAACTGTAGTTAGATGTACTAAAATTACTATTTAAATTCTACACATGTTTTATAACCAATCATCTTTTTTGAAATCTTTTGAGGTAATAGTGTTCTGTTAAAATTTATTAGAAAAACAGTATATCTAAAAGCTAAAGAATAAACGTCCCATATACCTTTTCTGATGCAAACTATGAAGTGGATTCTTCCTCTGTACAAGTATTTATGGTGAGAGAATAAATAATTGAAAGGATCAAATTCCTAGGGACAGAAATAAAACAGAATTGGCTACGAATTGATAATTGTTGGTCTGGGGACAGTTATGTTCATCTAACAATTCTCCTCTTTTGCTTGTATTTGAAATCTTTCTTTAAAAATACCTCTTTGAATGAATTAAAACACATTCATGAACACTTCTTTACACTTACGTACTTCACATTCTAGTCCTTGCAAAAAGGGGTCTTAGAGAGGGATAGAAAGGGAGGCTTTGCCAATTATCCCTATAACTTGTTTTCCATCTAGATTGACTTTCTTGTGCTCCCATCTGCTGGCCACACTGTGTAAAGCAGCCATGCTGAGGGAAAAATAAGGCAATGGCCTTGCAGAAATTATGATGGAGAGGAGTTATAAGAATAAGTTGGCAGCCTACTTAAAAAAAAAAAATAAATGCAGTAGTAAATAGAAAAATAATAATATAATCTTAAAGCAGAAAATAATTAAAAAGCTTCCACATGGTTCAGAAATATTATTCCAAATTTATCTACTTTCTATATAGATTTAAATTGATATGTAACGATAATTTGCCAAGGTTATGAGTAAACTATAACAGCCAGTATTTTTGAGACTGGAATTAACCGACACACGTGGGTATAGGTAACAGCTATTTAGCACAGGTACTCTCAAAGTGAAGTTTTGGTCAAATGTTCACTTCAACGTCATTGAATGATTGATGATTAACTATTCATCTTTCCTATCTTCACTTCTATGCATATATACTTATCCAGTCACTCTTATCCTCGACTGCCCTATCCTTTCCTTTTCCTATATAGGTAATTATAATGGAGATGTTTTATTAATGAAGAAAAAAGATTGTGAAAGCTGAAATATGAGAAAGTGATGTAAAATTATGATAAGGTGGTGTGAAGACATATGACTTAAGCGTCATTTTGATGGTCCACAAGGGCCATAACACATTCATTTTCCATCTAACTCTTTCTTTTTTAATGTACTTTAATAAATTAAGAAAAATTATGATAAATTTCCTGAATAAAAGAAAGACCCAAGTATCCCTAGGCATTTAAACTTGAAGGTCATCATAGTGGTTGGATGTTATGGTCCTGGCCCCTCTTATCATAGGAAATTTATTTGGAATAACATTCTGTTTCCACAGTTTTAGCCATAAAATCTCTGCCACAGACCATTGTTCCTGATTCAAGCGAAATATTTTTTCTGGACTACTCCTGGGGATCTTGGACTCAAGGCTTTGGTAATACCCTGTCGCCTAATAACAGAGTAAGAAATCCTGCCTCCCGCCTTCCCATAAAAGGAAAATAATTCCCTCTAACGTGACATGGCTAACTCAACCAATCATGCACTTGGAAAAGATCCTCAGGGACTTCACTCTTCAATTTAAAAACCTAAGAGAAACTACTGCTCTTTAAGCTTTAAACATCCTATTATAAATCAGAAGATACGGAAATCAATTAACCTATCTTTTCTTATCTGTCTTCAATCAACTCTGTACCTAGAACATTCTTGTACTCATTCAAGTTTAGTCTCCATTATCCAATTCAGTTCTACTTTTCTAGTTTGCATGAAGCAGAGGCAATGAGAATAATGTTTCCCTGTTTCAGCTTTAACGGTAAATAAACATTTTCTTTTAATTCATTGGGAGAATGATAGGTAAGATTTTTTTTTTTGTCAGTGATAGGGAAGAAGACTGACTCTATTTTAGCTCACAGGTATGTGTTTCCTACTTTAGCAATTACTTCATCCAGCCAAAGAAATCGGGTTATTCAATCACTTGCTCAAAAACTTAGGCTGGCTAAACAGTAGGCTTGCATACAACAGAATTTGTATATTTTATATGCTCTTGGTTGTGTAGAACCAATCTATAGCACATAGGTCTTACATAAAGGAATAATAAACATTTAAAAATAAACATTTCATAGTTTTGTATTTTTTCGTTAAGCTTGACCATCTAAATTAACATAGCACTTATTTATTCCTCTCTTACCAAAATTACTTTAGAAGTAAAAAAAAGTAAATGTGTCTTTGAAGTAGTATGTTAACTGTAAAAACAAATTTCTAATATGCTCTATTTTATTGCAAAATGGATGTATTCCATATTTCATGTATATAATTAATAAAAATTATTAAAGAAAATATTTTAACACACATATTTTGAAACAGTTGAGATCTAATGACATGTAAAGTACCCAAAATAAAAATTATTTCATATTGGTAGATAATATTGTATCATAATTCCCTTTAATAGCTACCTGTGCACACTCTGTAAAAGCCACCTCTAAAGGCAACTTATATAAGCACAGGGGATAGTGCTAGACTTTAGCACTGATTATAACATTGTGATTTATTTAATGTTTGTTTTTCTCTGTTGATTTTTATCAAAG
Seq C2 exon
CCTAGATGACTTACTCAGGTGTGGAGTGACTTTTGCTGCTAATATGGTGGTTGTGGATAAAGAGAGCACCATGAGTGCCGAGGAAGACTACATGGCAGATGCCAAAACCATTGTGAACGTGCAGACACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-KCNT2:NM_198503:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)