GgaINT0038239 @ galGal3
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2797167-2800522:+
Coord C1 exon
chr8:2797167-2797238
Coord A exon
chr8:2797239-2800387
Coord C2 exon
chr8:2800388-2800522
Length
3149 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CCTCTTTCTCTTCACAAAAGCCT
3' ss Score
3.93
Exon sequences
Seq C1 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATCGACAA
Seq A exon
GTAGGTGAAGTAACTGTTAGAAAACTTAACATTGTAGTGGTCAGTGGCTTGTTCTGTGTATTGTCATTGCATGCCTATGTGTGCGTTATATTTGAAGATGATCTATCTGCATGCATGGTTTGTGTGTCTATGTGCTACAGTTTGGGATTTCAAATTTCTGACTTCTAAAGGATATCGTTAGCAAAAAGTATGACAGGGAACAAAAGTTTAGTATCTTCAAAACCCAAACATTAACATTTTATTAGTATGTCACTAGAAATTGCCAGGTAATAGCTTCGATCCTAGTGACACCCTTTATCATTTACAGACTAGGGGTATGTAAAATAGCTATAGAATGTAAATAACACTAAAACTAATGAGTTTAAGTGCGTCCAACAGCCTTTTTCCCCTACATAAAATATTCGCCTACTTCTATATTTGTCTTCAGAAATTCTGCTAGTATATATTTGCATATCTAAGCTTAGCAACATAGATGTAACGTATAAATCAGGCAGAAATAACAAAGGGGAGAGAGGAGCAATGACTCATTAGCATTTTAGTAAGCTCCTGTGCCTAGACTGTCAAATCAAAATAGAAAATAGCTTGCTTCACTACGTGGCTGCTTTTGAGGTGGGGCTGCAAGGCCATAATACTCTTCTCCACACAGACATGAAATAATTTATTTCCTGCCCTGAAGTAGCAGAATCCATTTTTTTAATGAAATATTAAATATTCAACATTTTTAAAGTTTCATCCTGTTGTAACAGGGGCTTTAAAACTACTTATAACAGTGATAGAGATGCAGATTTATCTTGACAATACCTTGGTCACTGTGAGGTCTGCAGTGGATCTGTAGAGACGTTTCTCACTTACTAGATTTGTTTTTCTAAAGTAACTATGTGTCTTGGGTTGTTAATAGCTACTATTTTTTTAAGGTCTTAGTCCTATAAAAGTTACAGAAAATTCATAGAAACAGACTAATTGAACTGACTCACAGTATCCAAAATAAGTAGTAACCCAAAGACCTTATGCTGTTTTAATTAACTTGGAAGATTAAATTCTAATAAAAATTACTGGTTTTACTTGGAAAAGAAATGCTTCCCTAAATAAACTAAAACTAAATGCTTCCCTAAAGGTTTTTCACATTTGTTCTGAAGTGCATGTTATTTATTTTTAGGAAATGAATGCATAAAACTGAGTATACAGTCTATCAAAAACATTATTACGTAAAATTCTCATTTGCAGTATTGTTAACAAATTTATGCATCAAATCTGACAATACAGTCACTTTAAAATTCAGTCAGATTCTGTAGTTTATTTTTCGACGTCTATTTTCATCAGTAATGAGACTTTATACTTATTCTGTGTTTTCTGAGGTGTTTTAAAATCATATACAATCAATAGAAGTCAATCATGTTTAGCTAAATGTTACAATGTAAAATATACAAGTTTCATTTCTTAGTATCTCTGGAATTCACTTCCAATGCATTTAAGAATGCCGTCTGCTACCTTTTCACTATCTAATACAGTTGTCCTATGGTCACTTGGTATGAAATGTCACCAACTTGAAGAGAAAACCACAAAAAGAATTATCCATTTACAACACTCCTTTTTGTTATAAGCATGTAGCCTGCAGAAAAACATCTTTACAGAAATCCATAGCTTGAATGAACTTCATCAAAATGTACCAAGTTAGCAGAAACATCTAGACTTCAAGCATGTGAGATGTGTAACTGACCAGATTCCAGCAGGAATCTGTTAAATATTAAGAAATGTTGATAACTGAATTAGAATTCTAGTAAGTATTTTTGTAACTCTCCACATCTTTAAAAATAAAGTAGTAGTACAACTAAAAAAAAAAAAAGAATAGTTTTTTCATCACTGAAATGTGGAAAACATAGTTGTATTCTTGAATATGCTGCTATTTTCATCAACTAGGAGACTGAAATAGTAATAATTAAGTCAGTTAGAGAAAGGTCAGATTTCCACTTATGCAGTGATATTCTTAATATAGGCCATATAATTTTTTTAATAGCCAACCACCAGCTAAACTGCAGTTTCAAAAATTATACCATGTATTTGTTTTGGAAGAACACATACAGAACGTAAAATAAACACCAATGATGTGTATCCTTTTCCTTATTCTAAAATTTCAAAACAGATTTATAATAGGATATGTAAAGCTTAGGAGCCTTAGAAGCTCATTGAGAACAGGAATAATTGAATCAATATAGCTAAAACAGTATAATAGATTAGATCAACAGCCGAATGAAAAACAATTCTAATGACAAAATAGCTTTTCTTCCTTGGAAGTAAACAGAATGATGTAAAAAATGTAGCTTTTCAGTTTCCCCTGGAAACCATGAAATACCCTTTCTTCTCATTTTCACTTAAGTTGCTTGGTTCCCAGCAGCTTTTATTACAAAATAAATAAACAAACAAACAACAACAAAAAACCCTTCTGAAACTTTTCCAGAATCGTTTTAAAAGTAACTTTTCCCACAGAAACTAACAACCAAAACATGCTTCATTTTGGAAATAAACATAAGGCACGCTGGCAACTATAGCTTAGTTGTCAGTGATGGTTTTCTGTGATCAAGCTTCACAGTAGATTGTCCAGTGGGTGAAATGTTTTACTGAGGTACAGCTCTGAGGTGAGCTGCTCCTAAAAGCATTGTAACAGCACTCTGATAGATAAAAGAGGAGCTTTTCAGATGTGCCCTTAGAACCCTCATTAACATCTTGAAACTGAAACATAATTGTGGTAAAGACCAACTGAAATCATTTTAGATCCATTTTTTTTAATATATTGCTAAAAATAACTATAACAAAGCAAGTTGATGACACATGTAAGGCCATACAGTCTTTCCATGTATCTGTTAAAGGCTGATTTTTAATTTTTGAAATAATTCTACAATTTTAGGAAGATGAGGCTGACCATAACAACCTGCTGAAGTGTATTCTGTATGACTTCAAGGAAAGCAATTCATGTTCTATTCTCTCAATTCATGATATTTTCAACACAGACTATATTAGAAGTTACAATACATACATGGAGTTGCAGGGAACCAGCAACTCAGTGTGATTTATCAGTACCAACCATCACTAATCTTTTAAACATTCCAGGTTTAAGTGACTTGTTGATTTCTTCCTCTTTCTCTTCACAAAAG
Seq C2 exon
CCTAGATGACTTATTAAGATGTGGGGTCACCTTTGCAGCTAATATGGTGGTGGTGGACAAAGAAAGTACAATGAGTGCTGAGGAAGACTACATGGCAGATGCTAAGACTATTGTAAACGTTCAAACACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]