RnoINT0078082 @ rn6
Intron Retention
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57426539-57429680:+
Coord C1 exon
chr13:57426539-57426610
Coord A exon
chr13:57426611-57429545
Coord C2 exon
chr13:57429546-57429680
Length
2935 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TTTTCGGATTTTTATCAAAGCCT
3' ss Score
2.37
Exon sequences
Seq C1 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq A exon
GTAGGTGACAATGTCTATGGCACATGACGAGTGTAGTGTCCTGTTGTGATGTGTCAAGTGCTGTGTCTTGTTCCTGCATGATGAGTGTACTTGTTGTGTTGGTAAATATGGTGACTTATGCATGCGGAACACATGCCCCTGTGCTATGTACCTCCTGTCATACTGCTAAGCTGTAATTCATTGTGGAATTGCAACAGACCTTGCTGCATGTCAGGTTGGTCAGGTTCACACATTTGCAAAGCTCTTTCAGTCTTGCAGCTTTTGCAAAGGCAGCAGGTTTTGTTTTTTCAGTAGTATAGATAAGGTGGCATCCAAAAGTAACTTCAAATTCCACATTGCAGTGCAGTGAGACTGTTACCACAATTTCAATGTAAATAGTAACAATTTCATGTCAATTTGTTTCAGAAATTTTAAGAATTCATAATTATATAACTTGCTAATTGAAAGACTGTATAATACATGCAACTATGCAATGTATTAACATAAAATATAAAATATACATAAATGTTTTTGTGACACCATTAGTTAGAAAAATACATCGGCATCAGATTAATAGAATGAAATACTGTAAAATATGTGTGATGTTCAAAAAGGAAACCAAGAATATTACATTCCAAAGAAAGTGATGATTAATTGTAGAGTAATAATTATTGAAGGTTGATCACCAAATCTATATGCAAGTGTATGTACTAATTCTTGGTAGCTTATGCTTGAAATTTTCAAGAAAATAAAACACGTTTAAGCAAGAATACTTCCTCACACTTGCAAATTTCACATTTTCCAACTTAGGAAAACTGAGTCATGGAAAAGTAAAAAGTCAGCCCTGGTTAGAACAACTTTTGAGTTTGTCACTCAGATGAGTTTCCTTGACTACTATTGCCATCTGGTGGCTGAACTGTGTAAAGCAGTATCCTTTAAAAAAAAAAAGCGGGGGTGGAGGTGTGTGTAAAAACAGACATATCAGAACATAGCCAGAACTCATAAGAGTATGTCCATAGCTTACTCAAAAATGCTAGCATGTTAATTAGTAGCATGAAAGCCTTAAGAACCCAAAGATTCTACATGTTTCACTAATATCCCAATTGCATGTATTGTCTCTAAATTCTAATGCATCATTTAATAATAACTCATGGTCCTGAGTCACTATAGCAGATAACACTTTAAGGATGAAGCCAACAGATGCACTTGAGAGCAGGTTGTCTCAAGAAACTTAGAACAAACTCTCTTAGAAAAATATTTATTCAGCAATAACTCTTGTTTCGCAAAATCATTTCTGCTGTGATTCAGTAAAACTGACTTCTTACCAGTTTATATTTCTCTTGTTCTATAAAATCATAGGAGAAAATGTTGATGTAGAAAGGGCTATACAGGCTGAAAATACAAGGAAATACCTTAAAATTACTAAGTAACTGGGAGCAAGACGAGTTATCACCAAATTCTCCATAAGGGACCAAATCACTTTCTTTTTCTATCTAACTTTTTTCCATCTTGCAATGGCTTAAATTAAGGCATTGCACATGTTGAAAGGCATGTTACTGCTTGATAATTTCTAAAACGTAATTTAATCAATTTAGGGAGAAGTAAAATGAGTCTCCTACGCAAAAGGGAAATCCCAAACACTAGAGATTTACCTTGACGATCATTTGTACTGATCAGACATTAGAATTCTGTCTTCTTTTCTCATGGGAAATATATTTGCGATAAAATGCTGTATAAACCGTTTTAGCCTTAAAAATATCTGTCACAGAGAATAGCTCCAAATTCACACGCAGTGTTTGTCTCCCCATAACACCCCCTCAAATTTTTCCTAATAGACCTCTGAGGCCTGTTAGCCCATCATGTGCTTTTATGAGAATGTCCGGAAAATAATTTTAGTTAATATCAGTAGTGACTGCAGTTTTTTACACTTTAATTTTGTTAGCTTGAATTAGGAGGTTTGGACATTAACTGCTTTTCTTATCTGTCTTCACTGAACTCTGTAAGTACTACATCCTTTTTACTAGGTCAAGTTTAGTCTCACCCCATTTTTGTCCTGTTTTTTTTCTAGTCTATACTAAGCAAAGTCACTGAGACTAAATAGAAGCCCAAGTTCAGCCTCAATGATAAACATCCCTTTCTTTAATTTGCATGGAAGATTCCAATCAATACATCTTATAGAAATAAGAATGAAAACTGACCGGAATAGTTCACAACTACTTATACCTCAGTTTTTCTAGTTACCTCATAGAGAGGTACAAAGAAACTTGGACCATTCAATTTCTTGTTAAAATTTTGTTTTAACACATACATGCGTGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACATACACGCACGCACGCACGCACGCACGCACACACACACACACACACACACACACACACACACATACACACACACCTTACTGTCATTGAGATATAGAAACAATTGGTAGATCCAGATAGGTAGATATAGATAGATAAATATATAGATATGCATTTATGAATTCATATCACATACCTTTATATTTTACATTAGCTTGATGCCTAAATTAATGTAGCCATTGCCCCTCTTATACTCTCACAAAAAGCCACTTGGCAACTTGAACCAATTATATTGTTTTGTTCTTGAAATCATACAGTAGCTGTGAGCATGAATCATTGTCATATTTTTATTTTACTTTTTATACACTAAGTGTTACTGAGCACAGATTCCAAATATGAATGCTTTGGAACTGTTAGTATCTGACGAATTCGGAACTTCCTATCAGCAGGTCATGTTACATTACAGTGAGCCTTCGTGTCTATCTGCTTTCTCTATGAATTCAGCTGTAAGGATGCATTCCCAAGCCTACCAATAATCAACGTTAGGCGCTCAGTGCAGTATTGCCGTTTATTTAAAGACCTTCTTTTCTTCCTTTTCGGATTTTTATCAAAG
Seq C2 exon
CCTAGATGATTTGCTCAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312:ENSRNOT00000017884:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]