HsaINT0084799 @ hg19
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:17585]
Coordinates
chr7:128548479-128550773:-
Coord C1 exon
chr7:128550654-128550773
Coord A exon
chr7:128548622-128550653
Coord C2 exon
chr7:128548479-128548621
Length
2032 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGGATTCTTGTGCCCTTCAGGTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
GAGCCGCGACGACAGACGGCGAGCCGAGCGAGGCGGAGCTAGCATGGCCGGGGTCGGGGCCGCTGCGCTGTCCCTTCTCCTGCACCTCGGGGGCCCTGGCGCTGGCCGCGGGCGCGGAAG
Seq A exon
GTGAGTCCAGGTGCGGGAGGCTTGGGGTCCGGCCAGGTGCGCCCCCTCCCTCCTATCAGCCCGGCCTGAGGGGGCCGAGAGGGGCTGGGGGCTCTGCTCTTAGCCCTGCCTGAGGTTCGCGCGCCTCCCTGGCCAGCTCCGTCCTCCCCGTCGGGGGAGCGAGCAGGGTGGGGAAGACCACGGCCAAAGCAGGGGGTTCAGGAGAGGGGGGCGGTTCCTGCAGCCGGCGGCGGGAGAGAGTGCGGCTGCCCTGGCATCTGGGAGTCTGAAGTTAATTATTTGTCTTGACGAAGGAGGGGGAGAAAAGGGGCCCGCTGTGGAAGCTGACTTTGCATCTGTGTCTGGCCCTCCCCGGAGCAGGACAGGCGGGAATGGAGGGCTCGGTGCCGGCACGGGGCCAGGGGAGGCTAAGAGGGGAACCCGGGACAATTCCTTGGGGACCAGCCAAGTTTGTGCCACTCGGAGCTCTTTCTGCAGGTCTCTCCAGGCGAGGCTGGCCCTAGCTTCACCTAGGGGTCCCAGAGGATTCAGCTTCTCCCGGGCTCCCATATCCTGCCTGCCTACTTAAGCAGAACTGGAGGAGTGGCCTGGGAGGAGGGGCCCTGGGCAGCAGGATGAGGCCCCACGGGAGTCTAGATTGGGTAGAAGGTTTCAGATGCTGAGACGCCCATCGTGGCCGCCCTCTGTGTGCTTGGGAAGGACTGAGACCGGGTGCCATTCCGGGTGACAGGATCCCCAGTAGAGGGACGGAGATGGGAAAGGGCACCTGGGGTTTGAGGGCCAGTATTCGCCCAGGGTGCGGGAACTGAGTTAGAATCCCTGATATAAGCCAGAAGTAGCGGGGCTGGAAAGGTGGGCGGTGCTTGTGATCCATCCCAGCGGGACTTGCTCCTGGGAGACTTCGGCTGTGTGATTCAGAAAGGTCGAGTGGAGAGAAGGGGCACAGATGGAGGCAGGGACGCTTTGTCTTCAGCCTTCTGAATGGAGATGGTGGAGAGAGGAGAAGGGGGGGATGTATTAGGGGACAACTCAGGCAACAAAATAGGGGAGCTGAGCCCCAGCTTTCTGGCTTAAGTAACTGGGTATGTGTGATGGCATTAACCAAGCCAGGGAACTTGGGACAAAGCAAGTTCAATTTTAGCCTAGAATCCCCTCTGCCTTTGATGGTGACAGTGGGTGACATTGTTCCCCTGTCTCACAGGCCTAGTGTCTGTGAGAAACCCTTTTAAGCCACTCCAGGCCTGGCCTCACTAATGAGCTGCCATGGTGGGAAAGACCCATCCCTCTCCCTCCTCCTCTCTCTGTTCCTATTGCCTCCGCTCCAGACCCTCAACTTCCCTGCCCATCCCTGCCTGGAGGAGGGACCTATGTCTGCCTCTTCCCCTCCTGCCTTTACTTTCTGGGCTGCAGGAGAAGGATCAAAGTGAAAAGGTGAAAGTGGCCGCCCCTAACCCCAGGCCAGAGCTCAGAGGTGCCCCGTCCCTCTTTCCTGGACATAGTGTCTTCTAGAAGCAGGGACAGGCTGTCTTCACTGGATCTGGTGTGTTCAAAGTTAGCAGGGGCCTTGCCAGCACATTTCTCACACCCTTCAGAAAATGCAGCCAAGTCCCACTTTTGAAGCCCACCCCACCCAATGTGGGAGCCCCCAGGAACCCCTGTCACAAGCCTGGAAAACCGTGCTCAGGGTTGGGGGCGGGAGCAGTTGTCCTTCCCTGAGCACATTCTCCAAAAGTTGTGGCCTTTCTGACAGGTGCAGAGAGTCAGGGGATGGGGGCTGCTCATGTTCTCCCTGAAAAGACTCTCAGCCAGACCCCAGACCCCTGAAAGCAGCTCCACCTGGCGCATGTCTGTGGCCTTCCCCTGCGTTTCAGCCTGTGCTGGCTTCCCGGCCCTGGATGGTGGGTGGGCAATTGGAGAGGGCAGGGTGCACAGGATGACCCCCTTCCCCTGTGGGTCAGAAGACAGAACCCAGAAAATGTGGCCAGGCCAGCCCCTCACCCTCAGGCCCACATGGGATTCTTGTGCCCTTCAG
Seq C2 exon
GTGGGGCTGTCCCCAGGGAGCCCCCTGGGCAGCAGACAACTGCCCATTCCTCAGTCCTTGCTGGGAACTCCCAGGAGCAGTGGCACCCCCTGCGAGAGTGGCTGGGGCGACTGGAGGCTGCAGTGATGGAGCTCAGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-KCP:NM_199349:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)