MmuINT0085896 @ mm9

Intron Retention

Gene

ENSMUSG00000059022 | Kcp

Description

kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]

Coordinates

chr6:29455638-29457934:-

Coord C1 exon

chr6:29457857-29457934

Coord A exon

chr6:29455802-29457856

Coord C2 exon

chr6:29455638-29455801

Length

2055 bp

Sequences

Splice sites

5' ss Seq

GGGGTGAGT

5' ss Score

7.93

3' ss Seq

TGGGTTCTTGTGCCCTTCAGGTG

3' ss Score

9.64

Exon sequences

Seq C1 exon

GAGCGAGCATGGCGGGGGCTCGGGCGGCGTTGCTACCACTGCTCCTGCACCTCGGGAGCCTGGCGCTGGCCGCGCGGG

Seq A exon

GTGAGTCGGAGCGTCCTGGGTGTGCCCCAACTTATGGCTCAGCCCAGCAGACCGTCGGACCGGGCCAGACCACTTCTCCATCCCCGCCTGGGTTGCGCGTCGCTGGCCGGCCTTGGTGCTCTCTCTCCGTCCTCCCCGTCGGTGGGCGAGCAGGGTGGGGGCAGGGCGGCCAGACAGGGATTGCTGAACTGGGCCGGGTCCTTCTGTGGTCCCTGCCAAGGAGTCCTAAGTAGCGGTGAAGCAGAGGCTGTCCTGGCATCTGAGTATCTGAAGTTAATTATTTGTATTGAGGAGAGGGGGAGGGGAGCGCTCTCTGTGGGAAATGACTTAGTCCTGTCCGGCTTGCACTTATGGTTGGTCTCTGCAAAAGCAGAGTAGGAGGAGGGTAAGGGGAAACCTGAAGACAGTTTCTGGGGAGCAACCAGATTCGTGCCACTTCCAGGACTTTCTGCAGATCTTCCAGGAAAAGGGACTGAGCCTGTCTTCAGCTGGGGATCCAAGAGGACACCCTGAATGGCTCCTCGGCCCCCTCCGTTGTGCCTGCTTAAGCAAAGCGGGAGGAGCTGGTTGGGTGCTGGGGCTTTAAGGGTTGGGTCGCTAGAGGAGGTCACGCTTGGGGTTTCAGATACTGAGACCCCGCCCGCGAGCATCATCCTTGTGGATGGAAGTTGGGCAGGGAGACCATGTCAAGACAGTGCCAATTTCTGGGGACAAGGTGAGAACAGAATGCATGGGATGCTGGTGGTGTGAAGGTAGACCGGCTGGGACCTGTGGTGGGGAGAGCTGTATGGCGGTGGGGTGGAAAGCTGGGCAGTGCTGTGGTGACAGATGAAGTCTTAACTTGCTGCTTGGCGCCTTGTGCTGTGGAGAGAGGACAGACTGCAGTAGGAGACTTTCTCTTCAGCTTCTGTGAAGACAGTGGGATGGGGGTGGGGGTGGGGGAGGCCGTGGATTATGAGACAACTGAGGGAAACCAGAGACTGGTGGGAACTAAGGGATACCGGAGAGTAGCACTGAACCCCAGAGTTGGGGTGGCATTTATTGAGCCCCGGAAATTGGGCTGGAACGTCCTCCTCTTTATGGTGACAGTAGAAAGAAAGGAGCAGGTGACATCCCCCTGCTTCGCAGGCCTAGTGTCCCTGGGAGAAAGACTTTCAGTTACTCCAGCTCTTCCTGATTGAGTTGCCGCTGTGAGAAAGAAAGGCCAGACATCTCCTTCAGCCCCTTTCTTGGTCAGCACTTCTGGGGACCCTTCCACTCCATGATGTCTGTGGCCGGTGCCCTCGCCTCTACCTTCCTGCCTTGAGAGTGGGCATAAGGTGAAGAGAAATGTAGCTGGGCCCCACCCCAGGCCTAAGCTCAGAGGCCAGGGCTTCCTTCCTGGACATAATGTTATCTAGTCCCAGGGACAGGCTGCCCTCTCTGTCTGGAGTGCTGCATCTGTTGGAGTGTTGCATGCTGTTGCCAACACAGCACAGCTAGCTTCTGCCTTCCAGAGCCCACTGCATCCAATATGGGGGTTCCTGGCTTCTGCCACATGCAGCTCCTTTACTGACAGGTATAGATGAGTGGACACGCGTGGACATACACACACCAGTTCGTTCTTGCACGCATCCCACATCCTCGTCTTCATTTCAGCCTGTGTTATCTCTTGATCCTAGCATAACATATCAGACCTCCGAGCTGTCTCTGACCCACAGTGGATGGATGGTCCGAGCACCCCACCTCCATGACTAAAGATCCCTACAATCAGAGCAGGCTGCAGGGGGGCCTGGGTTGGGATACTGCTGTGTCCCCTTTGGGAAGCTGGCATAGGCCACTTCAGTGCTCTCAGGGCATCTGCCTCCTCTCGTTTCTGGGTTCTCATGATATTCTTGCCTCCTTGCTTCCTCTCTGGCACCTTCAGAGACCATGTCTCCTCCCCTGGAGAAGTAGGTGGAAAGGAGAGGGCACAGGAGGACCCTTGTCCCCTGTATGGTTCAGAGGACGGACGGAACCCAGGAGACCTTAACCAGCCTCTGTCTACAGGCCAAGCTGGGTTCTTGTGCCCTTCAG

Seq C2 exon

GTGGAGAGGTCTCCAGAGAGCAGCCTAGGCTTGCTGATGCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGCAGAGGTGACTGACCTCAGAAAGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000059022-Kcp:NM_001029985:1

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.564

Domain overlap (PFAM):

C1:

PF086146=ATG16=PU(10.4=33.3),PF039809=Nnf1=PU(15.0=50.0)

A:

NA

C2:

PF086146=ATG16=FE(70.1=100),PF039809=Nnf1=FE(67.5=100),PF0497710=DivIC=PU(66.0=56.4),PF053776=FlaC_arch=PU(56.2=32.7),PF0017016=bZIP_1=PU(61.5=43.6),PF0192015=Prefoldin_2=PU(62.2=41.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000099135