HsaINT1017235 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128908426-128910676:-
Coord C1 exon
chr7:128910601-128910676
Coord A exon
chr7:128908569-128910600
Coord C2 exon
chr7:128908426-128908568
Length
2032 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGGATTCTTGTGCCCTTCAGGTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
ATGGCCGGGGTCGGGGCCGCTGCGCTGTCCCTTCTCCTGCACCTCGGGGCCCTGGCGCTGGCCGCGGGCGCGGAAG
Seq A exon
GTGAGTCCAGGTGCGGGAGGCTTGGGGTCCGGCCAGGTGCGCCCCCTCCCTCCTATCAGCCCGGCCTGAGGGGGCCGAGAGGGGCTGGGGGCTCTGCTCTTAGCCCTGCCTGAGGTTCGCGCGCCTCCCTGGCCAGCTCCGTCCTCCCCGTCGGGGGAGCGAGCAGGGTGGGGAAGACCACGGCCAAAGCAGGGGGTTCAGGAGAGGGGGGCGGTTCCTGCAGCCGGCGGCGGGAGAGAGTGCGGCTGCCCTGGCATCTGGGAGTCTGAAGTTAATTATTTGTCTTGACGAAGGAGGGGGAGAAAAGGGGCCCGCTGTGGAAGCTGACTTTGCATCTGTGTCTGGCCCTCCCCGGAGCAGGACAGGCGGGAATGGAGGGCTCGGTGCCGGCACGGGGCCAGGGGAGGCTAAGAGGGGAACCCGGGACAATTCCTTGGGGACCAGCCAAGTTTGTGCCACTCGGAGCTCTTTCTGCAGGTCTCTCCAGGCGAGGCTGGCCCTAGCTTCACCTAGGGGTCCCAGAGGATTCAGCTTCTCCCGGGCTCCCATATCCTGCCTGCCTACTTAAGCAGAACTGGAGGAGTGGCCTGGGAGGAGGGGCCCTGGGCAGCAGGATGAGGCCCCACGGGAGTCTAGATTGGGTAGAAGGTTTCAGATGCTGAGACGCCCATCGTGGCCGCCCTCTGTGTGCTTGGGAAGGACTGAGACCGGGTGCCATTCCGGGTGACAGGATCCCCAGTAGAGGGACGGAGATGGGAAAGGGCACCTGGGGTTTGAGGGCCAGTATTCGCCCAGGGTGCGGGAACTGAGTTAGAATCCCTGATATAAGCCAGAAGTAGCGGGGCTGGAAAGGTGGGCGGTGCTTGTGATCCATCCCAGCGGGACTTGCTCCTGGGAGACTTCGGCTGTGTGATTCAGAAAGGTCGAGTGGAGAGAAGGGGCACAGATGGAGGCAGGGACGCTTTGTCTTCAGCCTTCTGAATGGAGATGGTGGAGAGAGGAGAAGGGGGGGATGTATTAGGGGACAACTCAGGCAACAAAATAGGGGAGCTGAGCCCCAGCTTTCTGGCTTAAGTAACTGGGTATGTGTGATGGCATTAACCAAGCCAGGGAACTTGGGACAAAGCAAGTTCAATTTTAGCCTAGAATCCCCTCTGCCTTTGATGGTGACAGTGGGTGACATTGTTCCCCTGTCTCACAGGCCTAGTGTCTGTGAGAAACCCTTTTAAGCCACTCCAGGCCTGGCCTCACTAATGAGCTGCCATGGTGGGAAAGACCCATCCCTCTCCCTCCTCCTCTCTCTGTTCCTATTGCCTCCGCTCCAGACCCTCAACTTCCCTGCCCATCCCTGCCTGGAGGAGGGACCTATGTCTGCCTCTTCCCCTCCTGCCTTTACTTTCTGGGCTGCAGGAGAAGGATCAAAGTGAAAAGGTGAAAGTGGCCGCCCCTAACCCCAGGCCAGAGCTCAGAGGTGCCCCGTCCCTCTTTCCTGGACATAGTGTCTTCTAGAAGCAGGGACAGGCTGTCTTCACTGGATCTGGTGTGTTCAAAGTTAGCAGGGGCCTTGCCAGCACATTTCTCACACCCTTCAGAAAATGCAGCCAAGTCCCACTTTTGAAGCCCACCCCACCCAATGTGGGAGCCCCCAGGAACCCCTGTCACAAGCCTGGAAAACCGTGCTCAGGGTTGGGGGCGGGAGCAGTTGTCCTTCCCTGAGCACATTCTCCAAAAGTTGTGGCCTTTCTGACAGGTGCAGAGAGTCAGGGGATGGGGGCTGCTCATGTTCTCCCTGAAAAGACTCTCAGCCAGACCCCAGACCCCTGAAAGCAGCTCCACCTGGCGCATGTCTGTGGCCTTCCCCTGCGTTTCAGCCTGTGCTGGCTTCCCGGCCCTGGATGGTGGGTGGGCAATTGGAGAGGGCAGGGTGCACAGGATGACCCCCTTCCCCTGTGGGTCAGAAGACAGAACCCAGAAAATGTGGCCAGGCCAGCCCCTCACCCTCAGGCCCACATGGGATTCTTGTGCCCTTCAG
Seq C2 exon
GTGGGGCTGTCCCCAGGGAGCCCCCTGGGCAGCAGACAACTGCCCATTCCTCAGTCCTTGCTGGGAACTCCCAGGAGCAGTGGCACCCCCTGCGAGAGTGGCTGGGGCGACTGGAGGCTGCAGTGATGGAGCTCAGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains