RnoINT0078125 @ rn6
Intron Retention
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56784485-56786754:-
Coord C1 exon
chr4:56786679-56786754
Coord A exon
chr4:56784652-56786678
Coord C2 exon
chr4:56784485-56784651
Length
2027 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGGGTTCTTGTGCCCTTCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATGGCGGGGGCTCGGGCGGCGCTGCTACTGCTGCTGCTGCTCCTGCACCTCTGGAACCTGGCGCTGGCCGCGCGGG
Seq A exon
GTGAGTCGGGGCGTCCTGGGTGTGCCCCAACTTCTCGCTCAGCCCAGCAGACCGTCGGACCGGGCCGGACCAACTTCTCCAGCACCGCCTGGGCTGCGTGTCCCCGGGCGGCCTTGGTGCCCTCTCTTCGTCCTCCCCGTCGGTGGGCGAGCAGGGTGGGGTCAGGGCGGCCAGACAAGGGTTGCTGAAACTGGGCCAGGTCCTCCTGCGGTCCCTGCCAAGGAGTCTTGAGCAGCGGTGAAGCAGAGACAATCCTGGCATCTGGGTATCTGAAGTTAATTATTTGTATTGAGGAGAGGGGGAGGGGGAGCGCTGTCTGTGGGAACTGACTTCGTCCTCTCAGGCTCCAAGTCTTGGGGCTTGCACGAATGAATGGTCTTTGCAGGAGCAGGTAGGAGGAGGGTGATGGGGAACCCGAAGACAGTTTCTGGGGAGTAACCAGGTTCGTACCCCTTCCAAGATTTTTTTTTTCCCAGATTTTCCAGGAAAAGGACTGAGCCTGTTTTCAGCTGGGGATCCCAGAGGACACTCCGACCGACTCCTCTGACCCCCTCTGTTGGGCCTGCTTAAGCAAAACCGGAGGAGCTAGTTGGGTGCTGGGGAGTAGGGTAGCTAGAGGAGGTCACACTTGGGTGAGGGGTTTCAGATACTGAGACCCTGTCCACGAGCGTCATCCTTGTGCATGGAAGTTGGGTGGAAGGGCCATGTCAAGAAAAGGCGATTTCTGGGGACAAGGTGAGAACAGGCTGGGTGGGAAGCTGGTGGTGTGAAGGCTAGGACCTGTGGTGGGGAGAGATGGAAATCTGTTGTGACAGATGAAATCTTAACTTGCTGCTCGGCAGCTTGTGCTGTGTGAGAGGAGCAAACTGAAATAGGGGGCTTTCTCTTCAGCTTCTGTGAAGACAGCAGGGGGAGTGGGAGGTTGAGGGTGGGGGGATGGACAGACAACCTAGGGAAACCAGAGATTGGTAAGAACTAAGAGGGATACAGAGTAGTGCTGAGCTGCAGATTTTTGCCTTGAGTAACTGAATTGGGGTGGCATTCACTGAGCCGTGGAAATTGGGCTGGGATGCCCCCCTCTTCGTGATGGCAGTACAAAGGAAAGAGTAGGTGACATCTCCCTGCCTCCAGGCCTAGTGCCCCTGGGAGAAAGACTTTCAGTCACTCCATCTTGTCCTGATTGAGTCGCCACTGTGGGAAAGAAAGGCCAGCCATCTCCTTCAGCCCCTTTCTTGGTCACCACCTCCGGGAAGCCTCTCACTCCCTAGATGTCTGTGGAAAGCGCCCTCACCTCTACCTTCCTGACTTGGGAGTGGACACAGGGGAAGGGGAGGCCCCACCCCAGGCCTAAGCTCAGCGGCACAGGCTTCCTTGATGGACTTAATGGCATCTAGCGCCAGGGACAGGCTGTCTTCACTGAGGCCAGCGCACCACAGCTGGGTTCTGCCTTCCAGAGTCCATTCCATCCAACATGCAGGTTCCTGGCTTCTGCCACATGCCCATAAGCAACGGGGTGGGTGGGACAAGTACCTTTCCCCAAGGCAGTTCCTTTACTGACAGGCATAGATGAGTGGACACGCGTGTCCGTACACACACCAGTTTGCTCCAACATCCTCATCTTCGTATCAGCATGTGCTGTCTCTTGTTTCTAGCATAACATCTCAGGTCTCCGAGCTATCTCTGACCCACAGTGGATGGATGGTCTGAGCACCCCACCTCCATGACTAAAGATCCCCACAGTTAGAGCCAGCTGCAGGGGCGCCTGGGTTGGGATACTGCCATGTCCCCTTTGGGAAATTGGTGTAGGCTACTTCAGTGCTCTCAGGGCTTCTGCCTCCTCTCATTTCTGTGTTGTCATGGTCATGGTATTCCTGCCTTCAGCACCCCTTCATAGACCATGTCTCCTCCCCTGGAGCAGTAGGTGGAGAGGACAGAGCACAGGATGACCCTTGACCCCTGGATGTTTCAGAGGACAGAACCTTACCAGCCTCTGCCTACAGGCCAAGCTGGGTTCTTGTGCCCTTCAG
Seq C2 exon
GTGGAGAGGTCTCCAAAGGGCAGCCTAGACTTGCTGATGTCCTTGAGTCTCAGCAGCAGGCCCCCTCCCACTCCTTGGTCCCTTGTGAGACCCAACAGCAGCAGTTATGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGCAGACGTGACTTACCTCAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855:ENSRNOT00000050795:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]