HsaINT0084806 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128891646-128892607:-
Coord C1 exon
chr7:128892514-128892607
Coord A exon
chr7:128891820-128892513
Coord C2 exon
chr7:128891646-128891819
Length
694 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCCCACCATCCACTGCCCAGACT
3' ss Score
3.31
Exon sequences
Seq C1 exon
GATGGAACTGTGACATGCTCCTTGGTTGACTGCCCTCCCACGACCTGTGCCAGGCCCCAGAGTGGACCAGGCCAGTGTTGCCCCAGGTGCCCAG
Seq A exon
GTATGTGGGCACTCACTGGGCCTGAGGGGATCAGGGCCCCAGAGGCTGCTGTCCCACAGCCCCATGGGCCCAACAGGTACCTTAGAAAGCAATGGCCTTCTGAATTGTTTCAGTCTTGTTTCAGAGCTTAGAACTCTCTGGAACTCACGGGGTGTGGGTGGGAGGGAGAGTAGAGAGATTTGTTTATTCCTGCCTGTACCTACACCACCCTCTCCTCCCATGCTCCATTTCCTCTTCTAGTAACTACTGCCCCCCGCCCCACCACGCTAGGGCCCCCACCCCCCTACCCCCCAGGTAAACCCATGTATCTACCTGGATAACACAGGTTCATGAGCAGGCACTTGAGCCTGCCACGTAGGAGGCCGGGTGCTGGGATGCATGGGACACGTCCCTGCCCGCATAGAGAGTCTGTGTGAGGGCGTGTGTCAAACACAGGTACACACATGTGTAAGCACTCCCCTTCTTCCCCTCAGAGACACACATCTGCCTGCAGGTGAATGACCCCCAATGCGCACGCACACTCGTGTGTGCTCACAACGATACACATGCCTGCACACATGTGCACATGGCCACTTCCTCCTCTTTCCCCTCGAGTCAGCTTCCAAGTGGGCACTTGTGTGGCGGCTCTGGACTCCAGGGCTGGAGGGACTGTCAGGCTTTGCCCTCATACCTGCCCCCACCATCCACTGCCCAG
Seq C2 exon
ACTGCATCCTGGAGGAAGAGGTGTTTGTGGACGGCGAGAGCTTCTCCCACCCCCGAGACCCCTGCCAGGAGTGCCGATGCCAGGAAGGCCATGCCCACTGCCAGCCTCGCCCCTGCCCCAGGGCCCCCTGTGCCCACCCGCTGCCTGGGACCTGCTGCCCGAACGACTGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
NA
C2:
PF0009313=VWC=WD(100=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTGACATGCTCCTTGGT
R:
CTGCAGTCGTTCGGGCAG
Band lengths:
262-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development