HsaINT0084811 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128907101-128907453:-
Coord C1 exon
chr7:128907264-128907453
Coord A exon
chr7:128907178-128907263
Coord C2 exon
chr7:128907101-128907177
Length
86 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGACACTGCTGTCTCCTTAGGCT
3' ss Score
9.05
Exon sequences
Seq C1 exon
AATAAGGACCTGCAGACGAGGGTGAGGCAGCTGGAGTCCTGTGAGTGCCACCCTGCATCTCCCCAGTGCTGGGGGCTGGGGCGTGCCTGGCCCGAGGGGGCACGCTGGGAGCCTGACGCCTGCACAGCCTGCGTCTGCCAGGATGGGGCCGCTCACTGTGGCCCCCAAGCACACCTGCCCCATTGCAGGG
Seq A exon
GTAAGTGCCACCCTATCCGCCCACTGGGGCCACCTAAAGACCTGCAGATGGCATGGGGTGCTTGAGTGACACTGCTGTCTCCTTAG
Seq C2 exon
GCTGCAGCCAAAATGGCCAGACCTACGGCAACGGGGAGACCTTCTCCCCAGATGCCTGCACCACCTGCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=64.1)
A:
NA
C2:
PF0009313=VWC=PD(0.1=0.0),PF0009313=VWC=PU(47.1=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTGCCACCCTGCATC
R:
CGTAGGTCTGGCCATTTTGG
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development