MmuINT0085918 @ mm9

Intron Retention

Gene

ENSMUSG00000059022 | Kcp

Description

kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]

Coordinates

chr6:29454233-29454567:-

Coord C1 exon

chr6:29454399-29454567

Coord A exon

chr6:29454310-29454398

Coord C2 exon

chr6:29454233-29454309

Length

89 bp

Sequences

Splice sites

5' ss Seq

GTGGTCAGT

5' ss Score

4.85

3' ss Seq

CATTGCTGTCTCCACCTCAGGCT

3' ss Score

7.64

Exon sequences

Seq C1 exon

AACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGGAGTCCTGTGAGTGCTGGGGGCCAGGTCACACCTGTCCCGAAGGAGCTCGCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCCGTG

Seq A exon

GTCAGTATCCTCCCATCCATCCATCGTGACTATTTGGGGACCTGGAGAAGGCACTGGGGTCTCAGGTGACATTGCTGTCTCCACCTCAG

Seq C2 exon

GCTGCAGCCACAATGGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000059022-Kcp:NM_001029985:3

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF086146=ATG16=PD(16.9=22.8),PF039809=Nnf1=PD(15.0=21.1),PF0497710=DivIC=PD(29.8=24.6),PF053776=FlaC_arch=PD(37.5=21.1),PF0017016=bZIP_1=PD(33.3=22.8),PF0192015=Prefoldin_2=PD(32.4=21.1),PF0009313=VWC=WD(100=87.7),PF094435=CFC=WD(100=56.1)

A:

NA

C2:

PF0009313=VWC=PD(0.1=0.0),PF0009313=VWC=PU(82.8=92.3)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000099135