HsaINT0085429 @ hg19
Intron Retention
Gene
ENSG00000088247 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:6316]
Coordinates
chr19:6421289-6421699:-
Coord C1 exon
chr19:6421661-6421699
Coord A exon
chr19:6421329-6421660
Coord C2 exon
chr19:6421289-6421328
Length
332 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTGGGTTTTCTCTCTACAGCAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATCAACCGGAGAGCAAGAAGCTGGCTTCCCAGGGAGACT
Seq A exon
GTAAGTCCAGGGGGTCTGGTGGCAGATATGTGGCTTCAGAGGGTTGAGGTTTTCAGGAGTCAGGAGCTGGAAGCACTGAGGAGGTGGCAGCTCTTTACAGAGGCCCCTGGTGCTTCATTCTGGGGCCCATACGTTTGAGGGATCCCAGGAACCCTGAAATTGAGGGAGATGAGCTCTGTGCTTTTATGGGGAGGAATCCACAGCATCCATGAGGCACTGGAGCAGGCTGGGGACCGTGGTGCCGGGCTCAGCTCCCACTGACCCGGGGCAGGCAGTGCCAAGTGCCCGAGGAGGAGCTAAGCCAGTCTTTGCTTTGGGTTTTCTCTCTACAG
Seq C2 exon
CAATCAGTTCTCAACTTGGACCCATCCATCCTCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088247-KHSRP:NM_003685:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)