MmuINT0086535 @ mm9
Intron Retention
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57167240-57167417:-
Coord C1 exon
chr17:57167379-57167417
Coord A exon
chr17:57167280-57167378
Coord C2 exon
chr17:57167240-57167279
Length
99 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTTTGGATTTCTTTTCCCAGCGA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ACCAGCCAGACAGCAAGAAACTGGCTTCCCAGGGAGACT
Seq A exon
GTAAGTCCACTGGGTGTGTGCAAACGGGGCATCATGGGTTGGGGTTGGGGAGCCCAGATAGATGCTAAGCTAGTCTCTGCTTTGGATTTCTTTTCCCAG
Seq C2 exon
CGATTGGTTCTCAACTGGGACCCATCCATCCTCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670-Khsrp:NM_010613:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCCAGACAGCAAGAAAC
R:
GAGGATGGATGGGTCCCAGTT
Band lengths:
72-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: