HsaINT0088495 @ hg38
Intron Retention
Gene
ENSG00000127528 | KLF2
Description
Kruppel like factor 2 [Source:HGNC Symbol;Acc:HGNC:6347]
Coordinates
chr19:16325216-16327874:+
Coord C1 exon
chr19:16325216-16326032
Coord A exon
chr19:16326033-16326855
Coord C2 exon
chr19:16326856-16327874
Length
823 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCTCGCCCCCTCCCTGCAGGTG
3' ss Score
13.76
Exon sequences
Seq C1 exon
CGCTGGCCGCGCGCCGAACCCGAGTCCGGCGGCACCGACGACGACCTCAACAGCGTGCTGGACTTCATCCTGTCCATGGGGCTGGATGGCCTGGGCGCCGAGGCCGCCCCGGAGCCGCCGCCGCCGCCCCCGCCGCCTGCGTTCTATTACCCCGAACCCGGCGCGCCCCCGCCCTACAGCGCCCCCGCGGGTGGCCTGGTGTCTGAGCTGCTGCGACCCGAGCTGGATGCGCCGCTGGGGCCCGCACTGCACGGCCGCTTTCTGCTGGCGCCGCCCGGCCGCCTGGTCAAGGCCGAGCCCCCTGAAGCGGACGGCGGCGGCGGCTACGGCTGCGCCCCCGGGCTGACCCGTGGACCGCGCGGCCTCAAGCGCGAGGGCGCCCCGGGCCCGGCGGCTTCGTGCATGCGAGGTCCCGGGGGCCGCCCCCCGCCGCCGCCCGACACACCGCCGCTCAGCCCCGACGGCCCCGCGCGCCTGCCCGCGCCCGGTCCGCGCGCCTCCTTCCCGCCGCCTTTCGGTGGCCCTGGTTTCGGCGCGCCCGGGCCCGGCCTGCATTACGCGCCGCCTGCGCCCCCAGCCTTCGGTCTCTTCGACGACGCGGCCGCCGCCGCGGCAGCCCTGGGCCTGGCGCCCCCCGCCGCCCGCGGTCTCCTCACGCCGCCTGCGTCCCCGCTGGAGCTGCTGGAGGCCAAGCCAAAGCGCGGCCGCCGCTCTTGGCCCCGCAAACGCACCGCCACTCACACCTGCAGCTACGCGGGCTGCGGCAAGACCTACACCAAGAGTTCGCATCTGAAGGCGCATCTGCGCACGCACACAG
Seq A exon
GTGGGCGGCACGCACGAGCCAGGAGCGCAGGCGGGGGGACGCGGGAGGAGAGGTCGGATTCCCAGCGCGCGCCAGAAAATGAATTTAGGACCTCCCTTGGGGCGTGGCTCAGGGGGATCTGGCAGGTGGTGCACGCTTAGGACTCCCCAGGAGGCGTGGCTCGGGAGGTTGGTTGGGGGGGCACACAGGAACACTCCCTAAGGAAGTGTGATCCGAGAGGTTGGGGTGGGGGCTTGCACGCTTAGGACGAGGGGGGCCTCCGGAGGTTGGGAAGAGCACTTAGAAAACCTCCTGGAGGCGTGGCTAGGGAGACAGTCTCAGAAAGTTGGGGAGGGGGAGCAGGTTTAGGAGCCGCTGGGCACTTGGCTCAGAATCCCCGGGGCTGAGGCTCAGGTAGTTGGGGAGTAGGTGCGCGTTTAGGAACCCCGGGGAGATGCTGCGTCTCAGGAAGTTGGGGAGGGCGCTCAGGCTTGGGACTCCTCTGGGGACAAGGCTCAGGACCTTGGGGAGGGAGTGTTCGCTGGGAAACCTTGAGAGATTCCGTGTCTTAGAATGCTGGAGAGAGGGTGCATGCTTAGGACCCGTCGGGGAGCGTGGCTGACAACAGTGGGGAGTGGACCTTGCGCTCCTCCGACCCCCTGGGGGTGAGGATCCGGATTGTGGGGGGAGTTGGGGATGTAGGGCAAGGATCCCTCAGGGGCGCAACACTACCGCGGGGAGCGCGTCAAGGCCCTGGTTAGGGATAGGTTGCGCTCGCCGGGGTAGCCATACGTGCCCTGTCCTGGGAGGGGAACTGACGCTTACTCTCGCCCCCTCCCTGCAG
Seq C2 exon
GTGAGAAGCCCTACCACTGCAACTGGGACGGCTGCGGCTGGAAGTTTGCGCGCTCAGACGAGCTCACGCGCCACTACCGAAAGCACACGGGCCACCGGCCATTCCAGTGCCATCTGTGCGATCGTGCCTTCTCGCGCTCCGATCACCTGGCGCTGCACATGAAACGGCACATGTAGCCGGGACGCCCCCGCCCACCTGCGCGCGGCCGTGGCGGGTCCCACGCGCCGGGCGCGGCCCCCTCCCAAACTGTGACTGGTATTTATTGGACCCAGAGAACCGGGCCGGGCACAGCGTGGCTACAGAGGGTCTCCCTCGATGACGACGACGACGACGCCACCACCCCAGCCCCCGTCTGTGACTGAAGGCCCGGTGGGAAAAGACCACGATCCTCCTTGACGAGTTTTGTTTTTCAAAATGGTGCAATAATTTAAGTGGCATCTTCTCTCCCACCGGGTCTACACTAGAGGATCGAGGCTTGTGATGCCTTGTGAGAAATAAGGGCCTTAATTTGTACTGTCTGCGGCATTTTTTATAATATTGTATATAGTGACTGACAAATATTGTATTACTGTACATAGAGAGACAGGTGGGCATTTTTGGGCTACCTGGTTCGTTTTTATAAGATTTTGCTGGGTTGGTTTTTTTTTTAATTAAAAAGTTTTGCATCTTTTAAAAAAAATCACAGCACTGGTCTGGTTGCTTGGAACTGGGGCCTTGGGGCACTTGGGAGGAGGGGGGAGCGGAGAGTTTGATGGAGGGCAGCCCCACTAAAGCATCGTGTGCAGTGGGTCCTGCGTCTGCCAGCACCGGGACTGCCAGCTGCTGTGCCTGCCTGCCAGGAACCTGTGGGTTTTTCTGTAAATTTAGACACTGCATTTTAGGACTGAGGGAGGGTTATTTTAAGGTTGTTCTTTGAGCCATAAATTGCCTCTTTGCCCCACAGCTGGGGAAAGTGCTGGTCCCACTGACGTGGCCTCCTCTACGTTGAAAAAAATAAAACTACTTACCTCTTCCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127528:ENST00000248071:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(35.7=3.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGTCTCTTCGACGACG
R:
CACAGATGGCACTGGAATGGC
Band lengths:
357-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development