RnoINT0079855 @ rn6
Intron Retention
Gene
ENSRNOG00000014205 | Klf2
Description
Kruppel-like factor 2 [Source:RGD Symbol;Acc:1359220]
Coordinates
chr16:19223087-19224637:-
Coord C1 exon
chr16:19223830-19224637
Coord A exon
chr16:19223263-19223829
Coord C2 exon
chr16:19223087-19223262
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTCCTTCCTTTCTGCTATAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
CGCTGGCCGCGAAATGAGCCCGAGGCGGGCAGCACGGATGAGGACCTAAACAGCGTGCTGGACTTCATCCTGTCCATGGGACTGGACGGCCTGGGCGCCGAGAACCCTCCCGAGCCCCCACCGCAGCCCCCGCCTCCTGCGTTCTACTACCCGGAGCCGGGTGCCCCTCCGCCCTATGGCACCCCGGCGGCTGGCCTGGGAACGGAGCTGCTGCGCCCGGATCTGGATGCGCCTCAGGGGCCGGCTCTACACGGCCGCTTCCTCCTCGCGCCTCCCGGGCGGCTGGTGAAAGCCGAGCCCCCGGAGGTGGACGGCGGCGGCTACGGGTGCGCAGCCGGCTTGGCTCGCGGACCGCGCGGGCTGAAGCTCGAGGGCGCCCTGGGAGCGACAGGTGCATGCATGCGGGGTCCTGCTGGCCGTCCCCCACCGCCCTCCGACACGCCGCCGCTCAGCCCCGACGGCCCCCCGCGCCTCCCGGCGCCCGGTCCCCGCAACCCGTTCCCGCCACCCTTCGGCCCCGGCCCCAGCTTCGGCGGCCCCGGCCCCGCGTTGCACTACGGGCCGCCCGCTCCCGGCGCTTTCGGTCTCTTCGACGACGCGGCGGCGGCTCTGGGTCTTGCTCCCCCTGCCACGCGCGGTCTCCTCACGCCGCCCTCGTCCCCGCTGGAGCTGTTGGAGGCCAAGCCCAAGCGCGGCCGCCGCTCCTGGCCCCGCAAGCGCGCCGCCACGCACACTTGCAGCTACACCAACTGCGGCAAGACCTACACCAAGAGTTCGCACCTAAAGGCGCATCTGAGGACGCACACAG
Seq A exon
GTGGGCGCCTGGCCTCACTCCCCGGAGCTGCAGCAGTGGGATGGATGGGAGCGAGTTCAGGAACAGGCTAGGTTAGAGAGGGAGAGCCTGTCCATCCTCCGGAAGGGAAATGGATACTGTCCCCAGAGTCTGGCTCTGGCAAGGGGGAGTGGCAGTTTAACGGATTGGCTACGGGGAAGGGACTCGGTTCTCAAGAATTCTGGACAGTGCAGGTGTAGTAGGGTCTGTGAGGGACATATTTAAAGAAGCTGGGGAGGGTTGGGCTGGGGCTAAGCTGGACGACTAACACCCCCAGCAGCACTGCATATAAAACCCTGGCATGGTGGCTTGAGCCTGTCATCTCGGCACTGAGCAGAACAGGAATTCAGACCTAATCTCAGAATGTTAGGGAAGGGGTGCGCCCGAGCCTGCTTGTGGTCAGCTTCAGGAGCCCAAGGGTCTCTGTTTGGATTAGATATGGGTGGGGATGAGATTGGAGAGGGAGGGGGGTCAGTGCTATCAGGTGCTGCCCGCCCGGAATAGGCTTTCGGGGAAACTGAGGCTTAATGTCCTTCCTTTCTGCTATAG
Seq C2 exon
GTGAGAAGCCTTATCATTGCAACTGGGACGGCTGCGGCTGGAAGTTCGCGCGCTCTGACGAGCTTACCCGCCACTACCGCAAGCACACGGGTCACAGGCCCTTCCAGTGCCACTTGTGCGACCGGGCCTTCTCCAGGTCCGACCACCTGGCTCTGCACATGAAGCGACACATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014205:ENSRNOT00000019052:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(35.7=3.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGGTCTCTTCGACGACG
R:
CACAAGTGGCACTGGAAGGG
Band lengths:
349-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]