HsaINT0088968 @ hg38
Intron Retention
Gene
ENSG00000183542 | KLRC4
Description
killer cell lectin like receptor C4 [Source:HGNC Symbol;Acc:HGNC:6377]
Coordinates
chr12:10408329-10409010:-
Coord C1 exon
chr12:10408912-10409010
Coord A exon
chr12:10408383-10408911
Coord C2 exon
chr12:10408329-10408382
Length
529 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGC
5' ss Score
4.33
3' ss Seq
AATCACTTTAATTTTTCTAGGTA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GTTTACTGCCACCTCCAGAGAAGCTCACTGCTGAGGTCCTAGGAATCATTTGCATTGTCCTGATGGCCACTGTGTTAAAAACAATAGTTCTTATTCCTT
Seq A exon
GTAAGCATATTCTTGAAAGATTATAAGGGAACTTTTCACTATAATGATTGGAAGCGCCTTGAAACATTTCATAATAATGAGGATTAGAATTCTCTGTTTAATGTATATCTCTGAACCCCAAGATAATATGCTGCTTCTGAACTTTTCAAATTTATAAATAACAGAATAATTGTAGAAAACATTTATTTTTTTGTGTGTACTAAATATATATGTATATATGATACACACACAGAGAGATGTATTCTGATTTCATGACTCAAAGACATGTTTTAAGAGAAAAAATATTTAGAAAAACAAATTAATTTTTGAAAGTGGTTAGATCAAATACTATAAGAGATGGTGAAGTTTTATGCTAATGGCTTTAAAAATATTTGTTTTAAAGATCTCATTATTTTTATAGAAAAGTCATTTTTATTTCAGATTGTTCCAATTTAAAATAATTTTAAATTTTGTATTTCAAAGTAAGCAACTGAATTTATTATAATTTGTCTAGATATTAATTTTGTAAGAATCACTTTAATTTTTCTAG
Seq C2 exon
GTATTGGAGTACTGGAGCAGAACAATTTTTCCCTGAATAGAAGAATGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183542:ENST00000309384:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(25.6=100)
A:
NA
C2:
PF054737=Herpes_UL45=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development