MmuINT0088264 @ mm9
Intron Retention
Gene
ENSMUSG00000033027 | Klrc3
Description
killer cell lectin-like receptor subfamily C, member 3 [Source:MGI Symbol;Acc:MGI:1929720]
Coordinates
chr6:129591414-129592829:-
Coord C1 exon
chr6:129592728-129592829
Coord A exon
chr6:129591590-129592727
Coord C2 exon
chr6:129591414-129591589
Length
1138 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
TAAGTTCATTTTGATTCCAGATA
3' ss Score
5.02
Exon sequences
Seq C1 exon
ATTTTGCATCACCTCCAGAGAAGCTCATCGCTGGAATCCTGGGCACCATCTGGTTTACCTTATTGATTGCTCTAGTAATCTCAACCAGAATTGTTTCTCCAT
Seq A exon
GTAAGCATGCTTTTGAGAGATTATAAGAGAGCCCTCCACTTTAATGACCAAGTGTCTCTCAGGGCTCATTGCTATTAAGAAACATAGCTTTTATTTTCAAGTACATATTTTAATTAAATATGGAATGGTTATTTTAACTTTGTCAGACTTATGAATGACAGGGTTATTATTATAATATGTTTGCTGTTAAGTGTACCAATTACGACTTTATAATTCAACAACACACTTTAGAATACTTCACTGAAAAATACAAATAAAGCTTGTTGGGTTTATTTACACTTTTCTTTTTTACACTACAGATTTTATTCCACACCACCCCCATGGCATACCACTTTCGAAACTTTATTTGTTGTTGTGGAACAAATAAAGTTTTGGAAGTGTCTTTCCCACCATGGGTTGCACGGTAAAGATGTTGAAATGTAGGCTTCCATTTAACTAATTTTTCCCAAGTTTTGAACATATTATTTATATTTTACCAACTGCAAATGTAGTCTGTATTATTTTAATTGAAATAGTACATCCACTTCAAACTAAGAAACTAAAATTTGCTATGATAATTCTAGATTTCAAATTTCTTAAGAGTGACTTTAACTCTCCAGATGCTGAACTGAAGAAGCAGATCCACCCCTTCTTGGTTAGAACCCAGAAAGGCTCACACGTCTTGCTCTCCAAAGGTCTTATGTTTATGCACATTCTATTTTGTCTCTAAGTTAAGACATGCAAAAGTTATATTACTAGGAAGAGAATAATCTAGAAATACTAACACTATATTCTCATACATATTAAAGGATGGTAATCATTTTTGTTGATCAACAAGAATAAATAATTACATAAAATAACCATAAAACAATCTAAATAATTGGCTTAAGTTTTCTACTGGCAAACTATGAATTCAGTCTCTTAGAACAGAGAATAAATTAGTGGTTATAAGGAAATCTGTACAGAGACAATTTTGGAGGTGTTTGTGTGCTTTAGGTGGATACATAAACTACGGACCAGAGGTTGACTCTGAGTGTACTTGAGTGTGCATTTTGTTTTCTATGTACAAGCGTATGGGGTACATGGGAATATTTTATACATGGATGTTCAAATTGTACATGTAAACTAATTTTCATTATTAAGTTCATTTTGATTCCAG
Seq C2 exon
ATATAAACCACAGTCTATCTTCAGCACAAACTTATGCTCTTTGTCCAAAGGAATGGATCTTATATTCTCACAATTGTTATTACATTGGCATGGAAAGAAAATCTTGGAATGACAGTTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCTTTATATAGACAGTGAAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033027-Klrc3:NM_021378:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGCATCACCTCCAGAGAAGC
R:
CTGCTCCTCTTCACTGTCTATATAA
Band lengths:
278-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: