HsaINT0088999 @ hg19
Intron Retention
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:HGNC Symbol;Acc:18788]
Coordinates
chr12:10530731-10531304:-
Coord C1 exon
chr12:10531153-10531304
Coord A exon
chr12:10530835-10531152
Coord C2 exon
chr12:10530731-10530834
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
3' ss Seq
TTATTTGTGGTTTCAAACAGGAT
3' ss Score
9.96
Exon sequences
Seq C1 exon
AAAGTTACTGTGGCCCATGTCCTAAAAACTGGATATGTTACAAAAATAACTGCTACCAATTTTTTGATGAGAGTAAAAACTGGTATGAGAGCCAGGCTTCTTGTATGTCTCAAAATGCCAGCCTTCTGAAAGTATACAGCAAAGAGGACCAG
Seq A exon
GTTGAGTATTTATTTTAATTTCCCATCCTGTATTTAATCCTAACATCTGAGACAACTCACTGGAATATGAACCTAGAACATATAAGGGACACTGTGACTTGGTTATTCTAATACCAACCCTAAATCTTTCTTCATTGAAAATAACAAAGCACAGAAATTGTAGGTATCATGTATGTGTGCTCGGATGAGAATTATGCCAGTTAGTGGACAGAATGCATTTTTTTACAAGTGTGAGAACAGATGAAATGGTTATGGTCTTGCGTTTACTAAAATTATCAACACTGATTTTACTTATAGTTTATTTGTGGTTTCAAACAG
Seq C2 exon
GATTTACTTAAACTGGTGAAGTCATATCATTGGATGGGACTAGTACACATTCCAACAAATGGATCTTGGCAGTGGGAAGATGGCTCCATTCTCTCACCCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-KLRK1:NM_007360:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(27.6=52.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTACTGTGGCCCATGTCC
R:
GGTTGGGTGAGAGAATGGAGC
Band lengths:
254-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)