RnoINT0080314 @ rn6
Intron Retention
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163395462-163396335:-
Coord C1 exon
chr4:163396184-163396335
Coord A exon
chr4:163395566-163396183
Coord C2 exon
chr4:163395462-163395565
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCAG
5' ss Score
2.78
3' ss Seq
TTCTCTGTGGTTTCTCACAGGAT
3' ss Score
10.57
Exon sequences
Seq C1 exon
AGGGCTACTGTGGCCCATGCCCTAACGACTGGATATGTCACAGAAACAACTGTTACCAATTTTTTAATGAGAACAAAGCCTGGAACCAGAGCCAAGCTTCCTGTTTGTCTCAAAATTCCAGCCTGCTGAAGATATACAGTAAAGAAGAACAG
Seq A exon
GTTCAGTATTTAATTCCATTTCATTCTAATACTTGAGGAAGGTCACTGTGGCATAAACCTGGAACATACAGCAGGCACCAAGGTTTCCTAACACCCATTCCAGACAATAGTGATAAAAATTAAGAAAGTAGAAGTTGGGGAGATGGCTCAGTGAGCTAAAGCATTTTTCTTAAAAGTTGAGGACCTGAACATGCACTCCACAGCTCCCATTAGGCACTGCTGCACATGTTTGTATCCCCAGCTCTAGGGTCAGAGATGGGTAGAACCCAAAAGCTCCTGACCAGACAGGAAGCATAGCTGAAAAGGTGAATTTTTGCTTCAGTGAGGGACCATGTTTCAAGACAATGAGACAGGGAACAACAGAGGGAGATACATTATGTTTTGTCCTAGTTTCTGTATGCAGGGTGAGCAACTGCATACTCATATGCAAATATACACACAACTGAACACCTCCAAAGGTAGAAAACTTAAGAGTGCAAAGATATTCGAGTGCCTACAGTTAAATGAGATTTACAGAGGCCATGGAACAATGCCTCCTTGCTCGAGTGGGAAGTTGGCGATACATTTCTAATGTTCTAGGCCTGAGTTTCATCTGTCTTTCTCTGTGGTTTCTCACAG
Seq C2 exon
GATTTCTTAAAGCTGGTTAAGTCCTATCACTGGATGGGACTAGTCCAGAGCCCAGCAAATGGCTCCTGGCAGTGGGAAGATGGCTCCTCTCTATCACCCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739:ENSRNOT00000088151:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(27.6=52.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACTGTGGCCCATGC
R:
TCGTTGGGTGATAGAGAGGAGC
Band lengths:
254-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]