HsaINT0090307 @ hg38
Intron Retention
Gene
ENSG00000130702 | LAMA5
Description
laminin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:62331032-62332480:-
Coord C1 exon
chr20:62332372-62332480
Coord A exon
chr20:62331130-62332371
Coord C2 exon
chr20:62331032-62331129
Length
1242 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TCTCGTCCCTCTGCCTGCAGCAC
3' ss Score
10.67
Exon sequences
Seq C1 exon
CACCCTGTGCCGGGGCACTGCCCGGGATACCCAGGACCACCTGGCTGTCTTCCACCTGGACTCGGAGGCCAGCGTGAGGCTCACAGCCGAACAGGCACGCTTCTTCCTG
Seq A exon
GTAAGGACCCCTCAGGTCCCCACCCCAAGGGGTCAGCTTCTTTCAGAAGATTTGAAACATGCATGAGAGGGGAGAGGACAGTTGGGGTCCCAGGTCCCCAAGGCGGCCACACTCGCTCATGCCCAGCCCAGCATGTTTCTTCTGGAACCCCTCCTGCAAGCGTTTTGTGGATTCAGTCCCTTTTGACGTACCCCCGAGCTGTTCCATGTGCTCAGGAAAGCACCTGCAGTCACAGCTCCCTGGCCCCAGGGCAGCCACCTCCTGGCACAGACAGCGTTGGTTGCCTGTTCTGGAACTTTCTTTTCTTTTTTTTTTTTTTTGAAATGGAGTCTCACTCTGTCGCCCAGGCTGGAGCGCAATGGCAAGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCGTGCCTCAGTCTCCCAAGTACCTGAGACTATAGGCACTCACCACCACGCCTGGCTAATTTTCGTATTTTTAGGAGAGACAGGGTTTCACCATATTGGCCAGGCTATTCTCAAACTCCTGACCTCAGGTGATCCGCCCTCTTGGGCCTCCCAAAATGCTGGGATTACAGACAGGAGCCACCATACCTGGCCTGGCACTTTCTATAAATGCCACACAACATGTTCTGTGCAGCCGCGTCTCCCACCGTTGTGTCAGCGGATAAGTTGCCGTGTTCCGAGACACCAACCTCACATGGCCGCACGGAAAGGGAGCACCCATTTGCGGCTTGTGCCTGCTGAGTGCCTGCCTGGGTCAGGTCCTGGGAGAGCTGGGCCTGGCCCGGCCTGGTGGCACCAAGCAGCACTCGAGATAAGAGTGGGGGAACAGTGACGGATGGGAGGGCGAGGGGGAGGAAGAGGGCTATGGGAGGAGCCGCATAGGCCTGTGGGCCCAGGAACTGGCCAACACGCTGGTCTGCGGTTGGGGTTTGTGCAGCTGGAGGAGGAGCAAGGGCATCTTGGAAAGAGCAGGGCTCGGTCGGACGCCTGGGTTTGCAGTTTCCTGGGTCTGAGCTGTGTGACCGGCCCCCCCATCGTACCGCCTGCACCCCCCATCGTACCGCCTACACCCCCCCATCGTACCGCCTGCACCCCCCCCATCGTACCGCCTGCACTCCCCATCGTACCGCCTGCACCCCCCCATCGTACCGCCTGCACCCCCCCATCGTACCGCCTGCACCCCCTATCCTCCCCGCACCACGGGCGTTGCAGCATCTCGTCCCTCTGCCTGCAG
Seq C2 exon
CACGGGGTCACTCTGGTGCCCATTGAGGAGTTCAGCCCGGAGTTCGTGGAGCCCCGGGTCAGCTGCATCAGCAGCCACGGCGCCTTTGGCCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130702:ENST00000252999:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development