RnoINT0084013 @ rn6
Intron Retention
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175570746-175571369:-
Coord C1 exon
chr3:175571261-175571369
Coord A exon
chr3:175570844-175571260
Coord C2 exon
chr3:175570746-175570843
Length
417 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
TATCACCCTTCCTCCCACAGCAC
3' ss Score
11.08
Exon sequences
Seq C1 exon
CTCCCTGTGCCGGGGTCCGGCTCGGGATACCCAGCATCATTTAGCTGTCTTCCACCTGGACTCTGAGGCCAGCATCCGGCTCACGGCTGAGCAGGCTCACTTCTTCCTG
Seq A exon
GTAAAGCCCCTTGCATCCTTGCCCCAGGGTGGCTTCTTCTAGCGTGTTCTAAGTATGTATAAAAGAGAACAGAGCCTTGGGTCCCAGGAGCTCCTGCAGTGCGGGGCTGTGGTGCACTTTCCTGTGAAGGGGCTTATGCAGATCTGGCTGTGTTCTTTTCCTCTAAGCCAAGAGCCCAAGACAGGTGGGGTGGAGACGAGTAGATAGGTGGGGGCACCACAAGGGTTGGGGAACAACCCTAGAAACTGTCACCAGTTCTGCACCCGAGTATGGGCTCCAGGCAGAAGGCAAGAGTGATGGGGTGTAGGCTCAGAGGATTCCTGGAGGCCAGTGTATGTGATCAGCCATCGAGATCCCGCTGCCCCTCCTGTCCTGGGCTGCCTAGGTAACGGCAGCATATCACCCTTCCTCCCACAG
Seq C2 exon
CACAGTGTCACCCTGATACCTGTGGAGGAGTTCAGCGCTGAGTTTGTGGAGCCCCGGGTCTTCTGTGTGAGCAGTCATGGAGCGTTCAACCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691:ENSRNOT00000081226:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]