HsaINT0090390 @ hg38
Intron Retention
Gene
ENSG00000091136 | LAMB1
Description
laminin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
Coordinates
chr7:107926183-107929205:-
Coord C1 exon
chr7:107929064-107929205
Coord A exon
chr7:107926360-107929063
Coord C2 exon
chr7:107926183-107926359
Length
2704 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGC
5' ss Score
7.75
3' ss Seq
GAAAATTGACATGCTTTTAGATT
3' ss Score
3.66
Exon sequences
Seq C1 exon
CAAAAGTGCAACAGATGTTAAAGTCACTGCAGATATGGTAAAGGAAGCTCTGGAAGAAGCAGAAAAGGCCCAGGTCGCAGCAGAGAAGGCAATTAAACAAGCAGATGAAGACATTCAAGGAACCCAGAACCTGTTAACTTCG
Seq A exon
GTAGGCATACACAATCATTACATGAATGGGAACACACCTACATATACACTTACCAGAAAAGTACATTTGTTATCTATGAACAGAAATTCTTACAACTCAACATTAAAGGATTCCTTTAATAAATCTAAACTACTCCGTTAGCATGGATGCTAAAAATAAGTGGAGATAGGTTTTCAAGGAATAAAAGGACTCTGATTCAGACACTGGACCATTACGTCCCATCTCATTTTCTCCCCCACAAAGTCTGAGAAAGATAAAAACTTCTATTCTTGGGCGGGCATGGTGGCTCACGCCTGTAATTCCAGCATTTTGGGAGGCCGAGGTGGGTGGGTCATTTGAGGTCAGTAGTTCAAGACCAGCGTGGCCAACATGGCAAAACCCCTTCTCTACTAAAGATACAAAAGTTAGCTGGGCATAGTGGTGTGTGCCTGTAGTCCCAGCTACCTGGGAGGCTAAGGCAGGAGAATTGCTTGAACCGGGGAGGTCGAGGTTGCAATGAGCTGAGATCACACCACTGTACTCCAGTCTGGGCAACAGAGACTCCATCTCAAAAAAAAAAAAAGCACTCCTATTCATTGAGGAAACAGCATATACTCTGTTCAGTAGTATGAAGTATAATAATTTTAGAAAACTGTCCTGATGTTATAAAGCAGCTTATCTGGTTAAGAAGGCCAATGTCTCAAGATTTTGGTCATCAAACATTTTACTATATAGTAGTTTTGGAAACTATGGGAGAACAGTCAGTCTGCTTTCAATACCCAATTCTAGAGAAACCTAATAGAGCACTTATAGCTAAACAATCTGTTCTGTTTAGAATGCATGGAAAACTTAATGTTTTTTATAAGAAATATACTGTGACTACCAGATATTAAAAGTACTCATTACGAATTTTTCATAGGGATCTAGCACCTTGCTCTAAAAATCCTCTTTATCTCTTAAAAGAAGTAATGCAAACATAATTCCATTAAATTCTTTTGTTTCTCAGAAAGTTAATGTTTTCGTTCCAATTTTACGAGTTTTTAAAAAATGAAGAAAATTGATGAGTTATCTAATCCCTATACAGGTTCTCAGAATATACTTTGAAATTAAATGCTCCCATACCCAGCATTGTCAGCCTTCTCAGGCCAATCCTCCATGTGTTTAAAACCTGGGAAGATGAATTTTCAACATGCTTTTCTTACCATTAGTTGGTAAAAACCTGTGTTCCCCTATTCTATTGCTGTCAGTTAAATGAAGGCCAATAATTCTGTCCATTTTCCTCCTTAAATTTCGAGTATCAATAAGACTTTTTCTTCAGGCTATTTGTTCAAGTTTAGAAAAATTATGTTTTCCCACCAGACTATAAATATTTTGATGTTTCGATCTCTAGGTTTTTCCATTTTCTCAGTTTGCTGTTAATATTTTAGTGAATATTATGTCAGTGACTGTAGAAATTATTGTTTTGAAAGCCAGGTGCAGCAGTGTGTGCCTGTAGTCCCAGCCACTTGGGAGGTGGAGGTGAGAGGATCACTTAAGGCCAAGAGTTTGAGACTATAGTGCACTATGATCATGCCTGTAAACAAACAGTCACTGCACTCCAGCCTGGGAAATATAGCAAGACCCTGTTTCTTGAAAAAAATTGTTCTGAAAAGCAAATTAGAAAATACTGAATTATAGGTGAGATGTGGCTTGATGATGCAAGTTAATAATTGGGGTTCTGTTTTTCAGGGGCCCTAGGGGGCAGGAAGTGTTTTAGGTTAGTAACAATAAGAAACAAAGAGAACCTCTAACTAAACTGTGTTCATGAAAGCTTATCAGAAACAATTCACTCAAACTTTATCTTCTAAGAATTATAATTTCTAAGAATTTTATTCTAATTAAAGGGTCCTTAGGTTTGAAATATTTACAAATTTTAGCCTATGTCTTATACTGACCCTTATTAACTTCATTATAGCAGTACTGTTATTCAGTTAATTCTATGTAATTAGACCCATCCTTGAAGATCATTTTAAAGAAAAATTGAGTGCTCAGTGAAATTGATTCTTTTGTCATGGGCTCAACTGCTTACTTTGGCTAGCTTTTAAAAGTCAATGTTTATTGATTCTACTTTGAAAGGAGATCAGATGTGGATCCTCACCAGTTGCCCAGATATTTTTTTTTCCCTAAATAACTTTGTGTATTTAGAGTTTACAGCTGTAACGTTCCCAGACCATACATCATCTCACAATTCTATAGAAATTCAAAGAACATCCCTAGTCTCCATGTCTTCAGTAATTAGCTGAAATCTCCACTACTAGAGTTTAACATTTATTTTCCCACTCACATTAAGTTGGAAATTTATGTGGAAATCCCTCTTCGCACAGCTGCTTATTTGTGAATGTTCTTTAGCCAAAGTTTGCAGGTGTCCTTAAAATGCTTTCTCAACACATCATGCTCCTTGGGGAGGTGGGGTTTTTTGTTTTTTTTTACTGTCAGAAAAAATTTTACATCAATCTCAGCTTAGATCATCAGAAGTACTGAAAGAATGAAGTGAATATATGAAATGTAGCAAAGACTAAAGTTAGATACTTCATGTAACTTTTCCTGAAATATTCTTTTTAGTAATTACTTCTTTTGGTCTAGAGCAAAATGGCACAGCAGACTTTTAAATCTTCCTCCAAACTTGTACTCATAGTAATTCCATTTCTTAAACTAATGTCTTGCTGGAAAATTGACATGCTTTTAG
Seq C2 exon
ATTGAGTCTGAAACAGCAGCTTCTGAGGAAACCTTGTTCAACGCGTCCCAGCGCATCAGCGAGTTAGAGAGGAATGTGGAAGAACTTAAGCGGAAAGCTGCCCAAAACTCCGGGGAGGCAGAATATATTGAAAAAGTAGTATATACTGTGAAGCAAAGTGCAGAAGATGTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091136:ENST00000222399:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development