DreINT0088163 @ danRer10
Intron Retention
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20257286-20260335:-
Coord C1 exon
chr23:20260194-20260335
Coord A exon
chr23:20257463-20260193
Coord C2 exon
chr23:20257286-20257462
Length
2731 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTTTTTTGATATCTCTAAAGATC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAATAAGGCAGAGGGGGTGAAGAACACAGCTGAGAGTGTGAAAAAGGCCCTGAATGATGCCAGCAGAGCCCAGGCTGCAGCAGAGAAAGCCATCCAGAAAGCTAAGAATGACATTGGCTTAACTCAGAACCAGCTGGCACAG
Seq A exon
GTAGAGCCCCATCAATGCAGACAGAACAAGTATAACAATAGCAATGAATTTAGCAAACTTAGGGTGAATAAATCAAAACTGCACATCTAATGTATAATGGTAATAGACATGGCATGGTTTAATTTCCTACACAAAATTGTAATGTTTGGGGTATTTTCAGAGTCCCTTTTACTGTTTAAGGACATCAACACATGAGCTTCATCCCTAGAGCTGTTTTGACAGTCATTTCATGAACATTTTACTTTTCTTTGAGAACATATAATAGTGTTTATAGACAACATACAGAAAATCAAGCAAAACTCATCAAAATAAAAGTTCAGGTTAATTTATGACAGATTATAACATAAATACAGTGCATCAAGAAAGTATTTATAGCGCTTCACTTTGTCCAATTTTTTTATGTTTCAACCTTATTCCAAAATGCATGAAATTCATTTATTTCCTCAAAATTCTACAAACAATACCCCATAATGACAATGTGAAAAAAGAGTTTTTGAAATTGTTGCAAATTTATTAAAAATAAAAAACCTGAAAAATCACATGTACATAAGTATTCACAGCCTTTCCTGTGAAGCTCTAAATTAAACTCGGGTTCATTCTGTTTCCACTGATCATTCTTGAGACGTTTCAGCAGCTTAACTGGCGTTCACCTGTGGTAAATTCAGTTGATTGGACATGATTTGAAAAGGCATACATCTGTCTATCTAAGGTCCCAGGGTTGACAGTGCATGTTAAAGCACAAACCAAGCATGAAGACAAAGGAATCGTCTGTTGACCTCTGAGACAGGATTGTCTTGAGGCACACGGCAGGGGAAGGTTACAGAAAAAATTCTGCTGCTCTGAAAGTTTAATTGAGCACAGTGGCCTCCTTCTTCCATAAGTGGAAGATATTTGGAACCACTAGGACTCTTCCTGGAGCTGGTCGGCCATCTAAGCTGAGTGATTGGGGGAGAAGAGCCTTAGTCAGGGGGGTGATTAATAACTCGATGGTCACTCTGTCTGAGCTACAGCGTTCTTCTGTGAAGAGAGGAGAACCTTACAGATGGACAGCCATCTGTGCAGCAATACCCCAATCAGGCCTGTATAGTAAAGTGGCCAGACGGAAGAAACTGCCCGCCTGGAGTTTGCCAAAAAGCATCTGAAGGACTCTCAGACCATAAGAAACTAAATTCTCTGGTCTGATCAGACTAAAATTGAACTCTTTGAAGTGAATGACAGGCGTTACGTTAGGAGAAAACCAGGCACCGCTCATCACCAAGCTAATACCATCCCTACAGTGAGTTATGGTTGTAGCATGAAGTGAAGCATGGTGGTACAGCATCATGCTGTGGGGATGTTTTTCAGCAGCAAGAACTGGAAGACTAGTCAGGATAGAGGGAAAGATGAATGCAGCAATGTACAAAGACATCCTGAATGAAAACCTGCTTCAGAGTGCTCTTGACCTCAGACTGGGGCAATGGTTCGATTTCCACCAGGACAATGACCCAAAGCACACCAGCAAAATATCAATGGAGTGGCTTTACAACAACACGGTGAATGTCCTTGAGTGGTCCAGCCAGAGCCAAGACCTAAATCCTATTGAACATTTCTGGAGAGATCTGAAAATGGCTGTACATCATCGCTTCCCATAAAACCTGATAGAGCTTGAGAGGTACTGCAAAGAGTAATGGGAAAAAATCCCCAAAGACAGGTGTGCAAAGCACACATTTTCCCAAATAAAACAGTAAAATGTTCATGAAATGACTGCCAAGACACGTCTAGGGATGAAGCTGATGTGTTGACATCCTCAAACAGTAAGAGGCCAAACTCTGAAAATACCACAAACATCCCACTTTTCTGTAGGAAATTAAACCATGCCATGTATTCACACAAAAAAAAAAATGCAGAAAAGGCTGTAACATAAAAAAATGTGGAAAAAGTGAAATACTTATTGGATGCACTGTATAGGCCATACTTTTTTTACAAAAAATTTACTAATAATAACAATAAAGTATTTTTTATTTTAAATATTCACAGTTTTACCTTTAAACTTTACATTTTAACAGAAACAAATCCAAATTTGAGGAAAAAATTATTCATATAATAATTCATATAACTCCAATAATACATTTCACAAAGTTCAGCAAAATTGTCTTTCCCATGATTTATTATTTATTATTTTACTTAACTAAAATGTTTTGGATACTAAATGGTTTTCTTGAGGTAAATGTCATTGTTTATAAGCTGTATTAATTTTTTCCGACAATGGTTTGTGGTTGGTAGCACGGTGGCGCAATGGTTAGCACCTTTGCCTGGGTGGAGTTTGCATGTTCTCCCTGTGTTTGCATGGGTTTCCTCAAGGTGCTCCGTTTTTTCCCATAATCCAAAGACATGTGCTAGAGATGAATTGAATAAGCTAAATTGGCCGTGTGTATGTGTGTGAATGTAAGAGTGCATGGGTGTTTCCCAGTACTGGGTTGCAGATGAAAGGGCATCTGCTGTGTAAAACATATGCTGGATGAGTTGGTGATTAATTTCGCTGTGGCGACCCCTGATTAATAAAAGGACTAAGCCAAAGAAAAATGAATGAATGGTTTGTGGTTAAAACACTCATTTAGCAATTACGAAGTGCAGCAAATTTCAGTACAGCTTCTTTCAACATCTAATAATGTTCCTGCAATAAACCTTACACTCAGTAAAATTCTTGCATTGTCCATATTTGACCATAATGTTTTTTTTGATATCTCTAAAG
Seq C2 exon
ATCCAGTCAGAGACCTCCGCTAGTGAGAGAGATCTTAATGATGCAGTGGACAGACTGGGAGACCTGGAGCGCCAGATCGAGGCATTAAAGACCAAACGTGCCAACAACAGCCTGGATGCTGCACGGGCAGAGGAGACGGCCACCATGGCACGGGACAAAGCCAACGAAGCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084:ENSDART00000147326:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=NA C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]