MmuINT0089680 @ mm9
Intron Retention
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108391784-108392284:+
Coord C1 exon
chr9:108391784-108391925
Coord A exon
chr9:108391926-108392107
Coord C2 exon
chr9:108392108-108392284
Length
182 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGA
5' ss Score
7.63
3' ss Seq
CCTGGGCCTTTCTGTGGCAGGTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GAGCCGGGCCGAGGGTGAGAGACAGAAGGCAGAGACAGTCCAAGCGGCACTGGAGGAGGCTCAGAGGGCACAAGGAGCTGCTCAGGGTGCCATCTGGGGAGCAGTGGTTGACACACAAAACACAGAGCAGACCCTGCAGCGG
Seq A exon
GTATGACTTCCTTAGGACGAGGTGATGGGCATGTACTAAGGATCTGGCTTGCTTTGTCTGGGACAGGGAGGTCTTACTGTGTAGCCCTGGGCAGCCTGGAAGTTACAGAGATCAACTTGCTTCTCCTTCTCAGTTGCTGGTACTAAAGGTGGATTTGTTAAACCTGGGCCTTTCTGTGGCAG
Seq C2 exon
GTCCAGGAGAGGATGGCAGGTGCAGAGAAGTCTCTGAACTCTGCCGGTGAGCGGGCTCGGCAATTAGACGCCCTCCTGGAGGCCCTGAAACTGAAACGGGCAGGAAATAGCCTGGCAGCATCTACAGCGGAAGAAACAGCAGGCAGTGCCCAGAGCCGTGCCAGGGAGGCTGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-Lamb2:NM_008483:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.695
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAGAGACAGAAGGCAGA
R:
CAGGCTATTTCCTGCCCGTTT
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: