RnoINT0084127 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117279427-117279938:+
Coord C1 exon
chr8:117279427-117279568
Coord A exon
chr8:117279569-117279761
Coord C2 exon
chr8:117279762-117279938
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
CCTGGTCCGTTCTGTGGCAGGTC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GAGCCGGGCTGAGGGTGAGAGACAGAAGGCAGAGACAGTCCAAGCGGCACTGGAGGAGGCCCAGAGGGCACAGGGAGCTGCTCAGGGCGCCATCCGGGGAGCAGTGGTTGACACAAAAAACACAGAGCAGACCCTGCAGCAG
Seq A exon
GTACGCTTCCTCTAGGACGTCAGTGGGACGAGGTTACGGGCATGCCCTGCGAATCTGTTTTGTTTTGTTTTGTTTGGGACAGGGTCTTCTATGTAGCCCTGGCTGGCCTGGAAGTTACAGAGATCAACTCGTTTCTCCTTCTCAATTGCTGGCACTAAAGGTGATTTGTTAAACCTGGTCCGTTCTGTGGCAG
Seq C2 exon
GTCCAGGAGAGGATGGCAGGTACAGAGCAGTCTCTGAACTCTGCTAGTGAGCGGGCTCGGCAGTTACATGCCCTTCTGGAAGCCCTGAAACTGAAAAGGGCAGGAAACAGCCTGGCAGCATCTACAGCTGAAGAGACAGCAGGCAGTGCCCAGAGCCGTGCCAGGGAGGCTGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCAGAGACAGTCCAAGC
R:
GTAGATGCTGCCAGGCTGTTT
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]