HsaINT0092510 @ hg38
Intron Retention
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 [Source:HGNC Symbol;Acc:HGNC:6642]
Coordinates
chr11:33858576-33864817:-
Coord C1 exon
chr11:33864602-33864817
Coord A exon
chr11:33859576-33864601
Coord C2 exon
chr11:33858576-33859575
Length
5026 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TTTTCTTTCTTTTGCCCCAGGCT
3' ss Score
10.97
Exon sequences
Seq C1 exon
GGAACCAGTGGATGAGGTGCTGCAGATCCCCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATTGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGTGAGGTGGGGCGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAG
Seq A exon
GTACCCTCCCCGGCACTCCACTGGGCCCTCGGAAGGGAGGCTGGGTGGTCCATGGACATCTGCAGTCGGTGTGTGTTGCCCCTTACCCTGCTCCAGGCTCGGACACCACCTATAGAAAGAGGTCAGACTGCAGAGGCTGAGTCTCAGCTCCTGTGCTGAGAAGCAGAGGGCATTTCTTCCTGTTTGAGAAGCATGTTCTCAGGGTTACGTTCCTATGTGGTAAAATACTAATATCTTTAAAGGCAAGAGAATTGTATACCCAAAATTCAGAAAAGTGCTTCCCTTGGGGAGCGGGAGAAGCTAGGGGATGGGATTGAGGAGGAGTACACACGGAGGATCAGAGGGACTGGGAGTGTTTCTAAGTTTGGAGGTGGGCTCTGAGGACCTCATTTGAATGCTTCAGAACATATATGTATGTTATAAATTTTTTTTGTATGACTCCAGTATTATATGATGAGAAATTTAAAAATAGAAAGCATATGGAGCTCCAAGCATTGACTCATAGCAGGAAGGCAGTCTTCGAAGAGCAGAAAGGCAAAGGCCCTGTAGGCAGTTGGAGGTTTGAGTCCCAATACCATTGCTTCCCAGCTTGGTGGCCTTGGGCAAGTTATTTAACCTTCCTAAGCCTCGATTTCCTTATCTGTAAAATGGGGATGATAATAGCACCTACCTCTAAGGATGTGGGGAGGATTTGATGGAATAATGCAGATAAACTACTTGGCTTGGTATGGATCAAATAGATGTTAGCTGCTCTTACATAATCATTATTTTCCAATCTAATGAGCAAAGGGATGGAAGAATGGAAGAGTAAAATAGGAACTCGACAACACCAAGTAAGACAGGAGCTGAGGACATCTCCCATGCTCTGGGCCATCCTATTGGCCATCCGAATTTTCCAGCACTGTGTGAAAGCCTTTGCCTAGAATGTACTAGTGTTTCTAGTTTCCGATGAGCTGCTGTGGAGGTAACTGTCTCTGTGCCCTCTACTGTCAGATCTGCTCAACTGTGTAGCTGTCAGTATTTCTCCGTTTTCCTGGAGCAGAGGGTCTGTGAAGCATGCTTCCCTGATACACCAGGACCATCCAACCCATGGAAGCTTGTTGAGACCTCAGCGCCCTTGGCTGCTGGGCCAGCTTTTCCTCCCAAACCTGCCCTCAGAGCATTTTACATTATAGAAACAAAACAAAACCAAAAAAACTGCAGGCAGTTTCACAGTGAAGGAAGCTTTACCTAAAGACTGTTAGAAGAAGCTTTTTGTCCTTGAATTCCCAGATAAAGTTCTTGCAGTCCTTGCAGATATGGTGGTTCCGAGAAAATAAGTAGGATTTTGCAATGATCATGCTTATAATTTTGGTCAGTTTTCTTTTTTTTAAGTCACAGAAAATAGAACTTGGATAAATACAGACCTGGTTTTGCTCACTCCCAGTTTGCCAAGTCAGTGAGAGGGCAGACGGGTAAATGATTCCCATCGGACCCTTGACTCCATCCCTGTCAAATCATTTGAATCTTATTAACTGAAGTGCAGATAGAGTAAGGTCAGAAGAGCCCCAGCTTCTCCCTATCTCTACCGTTTTATATAACATTCAGGAATAAAACCAGTGCTGCCTGGGCTTGTTAATCCTTTCCATTTTCAAAAAGGAGAGGAAAAAAAAAACAGTCTGGGAGAACCCAATGTTAATTAACTTGTGTCTTGGTGACATGAAATAATTCTTCTCCCTGCCACATTCCTAGGCAACATGTTAATTAACTCTGCATTAGTGCAGGCATTTCCAGCCATTCTTTAATATTTATATTATTGTTATTAAAATGGGCAGCAGAGAGCTTAAGATGGGACATCTCTTGACAGAGGAGAAAAATTGTCTTTTGCGTCAGGGATGGTCCTTTAGCCAAGGTCTTGTTTACTGGCATTCTTAGTATATCTGGCAGGATCTTTTAACAAGGCAAGTTGGAGGAGTAACTGAACGGGCCCTCTAATGTGTTTGAGTTCTTCACCCCTAGGATAACTTGTCCCCGTGAGGATTTCCAATGGCTGAGTTGCCTGTTACAGTTCTTTTCCGACATTTAGCTTCAAACATTCATGAGACCCCCATGCAGAACCTCAACTCTGCTGCTGTGTTGTATTGTTGGGAACCCAAGAGCAGCTGTTCATGTCTGTGCTGAGCCAGATCTCCTTGGATCCCTTTTCACTAATTCTTGTGTGCTGGGAGTGGTGGGGTGGCGGTGATGGCAGTGGTTTTGCTTTTAACAGCCAGCACCTGAATCTGTTAGAGCCAGAAGTATGCCTGCCCCAACTAGACCCCCAACGGACCTTAACCAGTGACAGACATGGTGGGAGTACCAAGCCCCGCAGCCTTGCCTGGAGCCAGGCATAACTTATATTCCAGGGTCCCTCCCCTCTGAGGGACTTTGCCTGAGGATACAACTTGGCTTGGCTTCCTCCCCTTCCCTCCAGCCTCCCCTGCTGCCTTCCAGGTTTTTCCTGAGAATGCCTCATTCATAAATCACTGGCACATCAATCCTTGCCTCAGGGGCTGCTTCTGGGATATCCAGCCTAAGATACCAATTCTTGGTGCCAGAGGTTAATGCTCAAGTTAGGTGTCAAGTCCCGGCTTATTTTTTACTAATATTAGAATCTCCGAATCCCAGAGCTGGAAGGGGCTACAGAGACCTTCTTTTTCAGTTCCCTTGCTTTATGGCTTAAGTCACAGAAGCCTGTACAGGGGACTCCATTTGCTCAGGTCACCTGGCAAGTTAGAGGTCATGCTGGGACCTGAACTTGTCTCCCACATATTCGTCCTTTGTCCTTCCCTTCATAGCTGCCTGATGTGGGTTGTAATTTACCCCCTGACTTCCCTTTAATAAGCTCCCTCCTTCCTTAAGGATCGCACACCCCAGGCAGTTGGATTCATTCCATGCACACTGTTTTCTCAGTCGTTCATCCTTGCTCAGGCCCAAACTTAACTTACAGAGCAGTCAGGAAACCAGAACTGTCTTTCCACTCTGTGACCTCCAATGTGGCGGTTACCTGCAGCTCCACCATCTGCTACGTTGGGATAAAATGTTCTCCCCCCAGTAATGAGTTTGCTCCCAGGCGGTGCTTTGAAAACACTCAGAGATCTTCAAATGGAAAGCAGGATTCAGAGGCAAATTAGCTGGCCCTGGCCCGAACAATGAGCTCTCCACTCACAGACCACCTCTTGTCAATTCCATTAATCTCGCCCAAATATTGCAAAATGTGTCAACTGCCCTTAGGTCCCCTACAACCTCTCAGAATGTACCCACTGATTCTCTGATATCCTGAAATCAACCAGAACTTCCAATAAGAGCAAGCATTCACCTAAAACTGTCCTAAAGGTTTTATGTAGAAACCACCTGCTAACATGCTATGTTTTCAGCCACGAGTGAAAATTACTTCCTGCAGCAAGACTGGCACAGCTGGGAATACACCCAAGATGTGTTAAAACATAACCAGCGTTGGCTTAGCCCTTGACCATGGGTGCCCTGACATGCTTCGTTTGGTTGTTTTAACAGCTGAGTGAGGTGGAGCCTATGATGGCTGCCATTTCACTGAGGCTCAGAGAATCAGAGGTCTCTCCAGGGTCACTCAGGGCTGGTCCGGGACATTGAAGCTGGGTCTTCTCTGCTTCCGGTACTTGTGTTACTGCACTTTTGCTGTTGATTCTCAAATGTCAGCCTGCAACCAGTCCCCCGGAAGTGTTCATTAACGCACAGACTGCTGGGCCTTCTCCCCAGGGTGTCTCAGTTGGGTAGGGAAGGAGGAGGGCTGAGAATTTGTTTTTTTGTTTGTTTGTTTAGTTTTTGCTTTTCTTTTGAGTCAAGGTATGGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTCCCGGGCTAAAGCCATCCTCCCACCTCAGCCTCCCAAGTATTAATAGCTGAGACTAGAGGCATGCACCACCGCACCCGGCTAATTTTTGTATTTTTTGTAAAGACACAGTTTCACCATGTTGCCCAGGGTGGTCTCGAACTTGTGAGCTCAAGTGATTTGCCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGCGCCCAGCCTGAGAATTTGTATTTCTGTCAGGTTCCCAGGCAGTGCTGATGTCGCTGGTCCCAGGACCAACACTTTGAGAACCACTGCACTGAGCCCTGCCATGTTCTGTCTCCCACCTTGACACTGAATACTGCCTGAAATAAGTGACTGATCAACTGAGGCTTGGGAGAGTCTTGATTTAAATGTCAGAAAAGAAGTTTCCCTTTTGATTCATGCCAGTGGGCAGCGAGGGCCATGAATTAAGATCCTCCCTTCATGGTGGAGAGATGCTGTTGGTCCTCCATATCTCAGAGGCACGATTAGCTGCACCGCGTGTTTTCTGTGGAACTCCCTGTCTCCCAGCAGCTGGGGCCCCAGCGAATAATCAGGGGGAGATGTGCTTTGCAGCTTATGGAGGTATTCAAGGCCAGCTCTCCCCATGGGTAGAATCAGTGGCTGTTGACATGATAGAGTTTGGGAGCCTCAGAAGAATGCCCGTTTTATTGCATTCCTGGTCAGTACCCTCTCAAAGGGGCCCCTAGGGTCTCTCTCCAGCTGCTCTTCTGAAATGAGGGTTCCCCTGGGAGGGGACAGGTAATACTTGCCTAACTCCTTATGATAGATCACATCAGCTGAGAGCCTTGCCCACAGAGGAGGAGCCAGGGGGCAGCCTAGGGGAATGATGAGCGGTTGCTGCAGACAAGGAGAGGGCTCAGAAAAGGGAGGAGTTATGCCAGATCCAAATGCCAGTTTCATCTGAGTTCCCTCTGCCTGCTGGTGAAGACTGCACTAGCCGGCCCTCCTTCTGGAGCCGACCTTCCCTGGCTTCCTGACATCCTGAAAGTTCGGCCTCCTTTCTAGGGCTCATCCCCGAGCCCTGTCTTCCAGGATTGTCCCTTTCACTGTCTTCTTAGCTTTTCTTTCTTTTGCCCCAG
Seq C2 exon
GCTTTTTGGGCAAGACGGTCTCTGCGCATCCTGTGACAAGCGGATTCGTGCCTATGAGATGACAATGCGGGTGAAAGACAAAGTGTATCACCTGGAATGTTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTCCTCATCAACTCTGACATAGTGTGCGAACAGGACATCTACGAGTGGACTAAGATCAATGGGATGATATAGGCCCGAGTCCCCGGGCATCTTTGGGGAGGTGTTCACTGAAGACGCCGTCTCCATGGCATCTTCGTCTTCACTCTTAGGCACTTTGGGGGTTTGAGGGTGGGGTAAGGGATTTCTTAGGGGATGGTAGACCTTTATTGGGTATCAAGACATAGCATCCAAGTGGCATAATTCAGGGGCTGACACTTCAAGGTGACAGAAGGACCAGCCCTTGAGGGAGAACTTATGGCCACAGCCCATCCATAGTAACTGACATGATTAGCAGAAGAAAGGAACATTTAGGGGCAAGCAGGCGCTGTGCTATCATGATGGAATTTCATATCTACAGATAGAGAGTTGTTGTGTACAGACTTGTTGTGACTTTGACGCTTGCGAACTAGAGATGTGCAATTGATTTCTTTTCTTCCTGGCTTTTTAACTCCCCTGTTTCAATCACTGTCCTCCACACAAGGGAAGGACAGAAAGGAGAGTGGCCATTCTTTTTTTCTTGGCCCCCTTCCCAAGGCCTTAAGCTTTGGACCCAAGGAAAACTGCATGGAGACGCATTTCGGTTGAGAATGGAAACCACAACTTTTAACCAAACAATTATTTAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTCATTTTGAGGGGAGGAGTTCCACAGATTGTTTCTATACAAATATAAATCTTAAAAAGTTGTTCAACTATTTTATTATCCTAGATTATATCAAAGTATTTGTCGTGTGTAGAAAAAAAAACAGCTCTGCAGGCTTAATAAAAATGACAGACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363:ENST00000257818:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.9=76.7)
A:
NA
C2:
PF0041217=LIM=PD(3.4=2.7),PF0041217=LIM=WD(100=79.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development