HsaINT0093770 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:74372343-74372792:-
Coord C1 exon
chr16:74372637-74372792
Coord A exon
chr16:74372477-74372636
Coord C2 exon
chr16:74372343-74372476
Length
160 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTGATTTTTCCATTCCGTAGACC
3' ss Score
9.07
Exon sequences
Seq C1 exon
CTTTGATGTATGATCTGAAGGTTCCCCACTGGGACTTCCAGACCGGTAGGCAGTTACGCACCTCTCCTCTCTACGACCGGCTGGATGCACAGGGAGCCAGGTGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCCCCTGACAAGG
Seq A exon
GTAAGAAGTCACATTCTCATTTTTGCTCCTTTTTTTTTTTGTCCTGGGAATTAATAAAACGTATTTTCAAATGCATAGGCTAGAATGTGTTCACAGAAGAAAAAGAACCACGTGGACTACACTAAACTCTACAGGGCCTTGTGATTTTTCCATTCCGTAG
Seq C2 exon
ACCTCCTGGCATTGGAGCAGAGCAAGACTTTCTATAAGCCAGATTGGTTTGACATCGTGGAGTCTGAAGTCAAGTGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAGAGTTTGAGATAACA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC283922:NR_026950:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGAAGGTTCCCCACTGG
R:
ACACACACAGCTTCCTTACAGC
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)