HsaINT0093771 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:74371373-74372476:-
Coord C1 exon
chr16:74372343-74372476
Coord A exon
chr16:74371522-74372342
Coord C2 exon
chr16:74371373-74371521
Length
821 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCATTCCCTAACCCTGCAGACC
3' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTCCTGGCATTGGAGCAGAGCAAGACTTTCTATAAGCCAGATTGGTTTGACATCGTGGAGTCTGAAGTCAAGTGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAGAGTTTGAGATAACA
Seq A exon
GTAAGTATTTGGGAACCAAAGTAATAGATTAGGAAACTTTGCATATTTATTGAATGCCTTTTGTTTTTCATCTTCAAAACTGATTCCTGACTGGGTGCAGTGGGTCATGCCTGTATTCCCAGCACTTTGGGAGGCCAAGGGGGGCGTGGATCACCTGAAGTCAGGAGTTCCAGACCAGCCTGGCCAAGATGGTAAAACCCCGTTTCTACTAAAAATACAAAAATTAAGGCCAGGAGTGGTGGCTCATGCCTGTAATCCCAGCAGTTTGGGAGGCCGAGACGGGTAGATCACCTGAGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCATCTCTACCAAAAATACAAAAAATTAACCAGGCATGGTGGCGGGCACTTGTAATCCCAGCTACTCGGGAGGCAGGAGAATCGCATGAACTCATGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAACAAAAACAAAAACAAAACACTGATTTCTTAAGAATTCTGGTATATTTTAGTGTTTCATCTGTATTGTGACATTTTTCTGAAATTTTAGCTCCTTGTTTCGGGTTTTTAATTTGCTAGAGAGGCCTGTTTATCATAAGAATCAATAGCTAGCATTCCCTGGAGCTTCTTGCAGTGGAGTAGGTCTGCAAGTGTTGTCACATGGGAATTGGCTGATTGAATTTTCTCAATGAGGTTCATTGCTGGTGGGGCCATGTGGCGCAGCCAGGTGCTCTCACTCTCACTCTCTCTGTTTCATTCCCTAACCCTGCAG
Seq C2 exon
ACCACTGGGGATCAGGCATTAGAAGTTCTACAGTACCTCTTCTCCAATGACCTGGATGTGCCTGTGGGCCACATTGTGCATACTGGCATGCTCAACGAGGGTGGAGGGTATGAAAATGACTGCAGCATAGCACGACTGAACAAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC283922:NR_026950:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCATTGGAGCAGAG
R:
GCGCTTGTTCAGTCGTGCTAT
Band lengths:
279-1100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)