HsaINT0093788 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:7816640-7819265:-
Coord C1 exon
chr17:7818997-7819265
Coord A exon
chr17:7818896-7818996
Coord C2 exon
chr17:7816640-7818895
Length
101 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ACCCTTCTTCTTTCCCCCAGTGC
3' ss Score
11.42
Exon sequences
Seq C1 exon
CTCGCAGCTCCCTCGCGGCGGCCTCACGGAGATGGCTCTTGACTCGGACTTGTGGTCGCGATTGGAGGAAAAAGCGCGGGCCAAGTGCGAACGAGATGAGGCTGGGAACCCGGCCAAGGAAAGCAGCGACGCTGACGGAGAGGCGGAGGAAGAAGGGGAGAGCGAGAAGGGGGCGGGGCCTAGGAGTGCTGGGTGGCGCGCGCTCCGGCGGCTCTGGGACAGGGTCCTGGGGCCTGCGCGGCGCTGGCGGCGTCCGCTGCCTAGCAACG
Seq A exon
GTGAGGGGCTGCCCGGGGAGGATGCAGGGGAGAGAGCGCCGAGGAATACCGAGGTTCGTTGGCATGCTCCTGCTGCCACTAACCCTTCTTCTTTCCCCCAG
Seq C2 exon
TGCTCTACTGTGCGGAGATCAAGGACATTGGCCACCTGACCCGTTGCACGTTGTAACCGAGGAACTCGGAAGCTACAGCCGAAGGAAGGTGGGAGCTGCAGCCTCGCGGGGGCTGATGTCAAGACTACTCTCTCTCAGATCCCAGGATTGGCATGTGATGAGAGAGATGAGCCGAAGGCAGGAGGGAACGCCCTGGGAGGTGTTGATGCTGAGTTGGGGAGGCTCCTAGACGAACTCGCCCCCATCTACTGACTGTGCCAGTCTTACATTTTCAGGATGGAGTGGCCAAGGGATGATATAAACAAAGCCTACGTTACCGTGGGAAGAAGACAGACTGTTTTCTTAGCTGGGACGTTGGCTTTTGTCCAGGGTGGCTCTGGTGTGTGGGAGCAACAGGTCCCATTTTAGCAATTCTTTGTCAATGGTTTGAATTTTTTTTTTTTTTAAGATGGAACGGGAGAGAAGAGGCTAATTTTCGCGTCATGTTAATCTCACTTCTCTGGCATGTAAGGGTGCTGGTATGCCTGCTGTCTCCCCACTCCCAGTTCTGTGTTCCAGAAATTGAGATGGCTCCCTGCCTGTGACTATGATTAGGAGCCTTGCTTCATTTCAGAATCTCCCTTCAACCTGCTAGGGCAGGTATCAGAAATTCCAAAGGGCATTTATGTGAGGCACCTAATTAGAGCCTATCAAAGTAGGAAGGGAGAGCCATTTGAAAGGCATCATATTTCAAACTTTTGCTATTATCTGTGTTATCTTTACAGTCACGGGAACACACTAGCGCTACTGAAAAGATACTTATACAATTTTAAGTGTCTTTAAAATTTGTGTCCCATAATGGGACATCACCTGTTGTATATATGCCATGTATTCTATTTTAGAATCCTGTATCTTATGACCATAAAGTCATAGTCAAGGACCAGCAGTGTTGGTGTACTGTCAACGGAAGTGCACAGTCTCACTCTAGGATCCCACTCCAGACTTCCTGAATCAGACTCTGGCAGGGTTTTTTGTTTTTTTGTTTTTGTTTTGAGCCAGAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAGCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCATCCTCCGGAGTAGCTGGGATTACAGGCGCCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTTGTCAGGCTGGTCTCAAAACTCCTGACCTCAGGTGATGGCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACCGCGCCGGGCCAGACTCTGGCATTTTAACAATCCCAGGTGATGTGTGTGCATGTGAAAATTTAAGTACCATTGGTCTAGATCCTACACTCTTTAGGATATCACCATCTGTAGGTAGAATATTTAAAGCATAATAGGTATGACTGATAGATTATTTTATCCAAAGTTCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGACTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGCTACAGGCACCCACCACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCACGCCCGGCCCCAAAGTTCTAAAGTAACATTCTATTGCTAAAGAAATCCTAACCTACTATGTAACATTTTTCTCTTAGTTAAAAATGTGAACTTATTATTAACCTCAATTTTTTAGAGGCCTCCAATCTTTTTAAAATATAAATATTTTTGATTGACAAATCATAATTATACACTTATGGGGGTATAAACCTCAATTTTTGTAACCCTATTTTGGCATTTTCCTGTCCTTACATCTCAGCTTAAATGCTCCCTCTTTTGGGAGGCCTTTTTCTGCCTTCAACATAGTAGAGCCTTTTCCCCCACCCCTCTGTAACATAATGCCCTGTTTTATTTTTACTGCTTTTATTTTCATGCTTTGTGGGTGTCCCCACTGGAGTGTAAGCCCTATGGGAGCAAGGGCTGACCTGTGACTGTTTTATCTCCAGGGCCAACAGCAGTGTTACTGTATAGTATGTACTCAATAAATATTTGTTGGCTTTATCTCTTATTTTTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC284023:NR_024349:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGACTCGGACTTGTGG
R:
TGATCTCCGCACAGTAGAGCA
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)