HsaINT0093788 @ hg38
Intron Retention
Gene
ENSG00000179859 | AC025335.1
Description
NA
Coordinates
chr17:7913324-7916276:-
Coord C1 exon
chr17:7915679-7916276
Coord A exon
chr17:7915578-7915678
Coord C2 exon
chr17:7913324-7915577
Length
101 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ACCCTTCTTCTTTCCCCCAGTGC
3' ss Score
11.42
Exon sequences
Seq C1 exon
GACCCGGCCCCAGGAGAGTGTGCTCGTTCTGTTCACGGAGCTGGCCGCGTTAGCGACGTCCTCGAGTCCGCGGCGGGCACGATGCAGCTCTTGGTGAGGGTACCCTCTCTTCCGGAGCGGGGCGAGCTGGACTGCAACATCTGCTACCGTCCTTTCAACCTCGGGTGCCGCGCGCCCCGCCGCCTGCCCGGAACGGCGCGCGCCCGCTGCGGCCACACGATCTGCACCGCCTGCCTCCGCGAGCTGGCGGCGCGCGGGGACGGCGGCGGGGCGGCCGCGCGCGTGGTGCGCCTGCGCCGCGTGGTCACGTGCCCCTTCTGCCGCGCGCCCTCGCAGCTCCCTCGCGGCGGCCTCACGGAGATGGCTCTTGACTCGGACTTGTGGTCGCGATTGGAGGAAAAAGCGCGGGCCAAGTGCGAACGAGATGAGGCTGGGAACCCGGCCAAGGAAAGCAGCGACGCTGACGGAGAGGCGGAGGAAGAAGGGGAGAGCGAGAAGGGGGCGGGGCCTAGGAGTGCTGGGTGGCGCGCGCTCCGGCGGCTCTGGGACAGGGTCCTGGGGCCTGCGCGGCGCTGGCGGCGTCCGCTGCCTAGCAACG
Seq A exon
GTGAGGGGCTGCCCGGGGAGGATGCAGGGGAGAGAGCGCCGAGGAATACCGAGGTTCGTTGGCATGCTCCTGCTGCCACTAACCCTTCTTCTTTCCCCCAG
Seq C2 exon
TGCTCTACTGTGCGGAGATCAAGGACATTGGCCACCTGACCCGTTGCACGTTGTAACCGAGGAACTCGGAAGCTACAGCCGAAGGAAGGTGGGAGCTGCAGCCTCGCGGGGGCTGATGTCAAGACTACTCTCTCTCAGATCCCAGGATTGGCATGTGATGAGAGAGATGAGCCGAAGGCAGGAGGGAACGCCCTGGGAGGTGTTGATGCTGAGTTGGGGAGGCTCCTAGACGAACTCGCCCCCATCTACTGACTGTGCCAGTCTTACATTTTCAGGATGGAGTGGCCAAGGGATGATATAAACAAAGCCTACGTTACCGTGGGAAGAAGACAGACTGTTTTCTTAGCTGGGACGTTGGCTTTTGTCCAGGGTGGCTCTGGTGTGTGGGAGCAACAGGTCCCATTTTAGCAATTCTTTGTCAATGGTTTGAATTTTTTTTTTTTTTAAGATGGAACGGGAGAGAAGAGGCTAATTTTCGCGTCATGTTAATCTCACTTCTCTGGCATGTAAGGGTGCTGGTATGCCTGCTGTCTCCCCACTCCCAGTTCTGTGTTCCAGAAATTGAGATGGCTCCCTGCCTGTGACTATGATTAGGAGCCTTGCTTCATTTCAGAATCTCCCTTCAACCTGCTAGGGCAGGTATCAGAAATTCCAAAGGGCATTTATGTGAGGCACCTAATTAGAGCCTATCAAAGTAGGAAGGGAGAGCCATTTGAAAGGCATCATATTTCAAACTTTTGCTATTATCTGTGTTATCTTTACAGTCACGGGAACACACTAGCGCTACTGAAAAGATACTTATACAATTTTAAGTGTCTTTAAAATTTGTGTCCCATAATGGGACATCACCTGTTGTATATATGCCATGTATTCTATTTTAGAATCCTGTATCTTATGACCATAAAGTCATAGTCAAGGACCAGCAGTGTTGGTGTACTGTCAACGGAAGTGCACAGTCTCACTCTAGGATCCCACTCCAGACTTCCTGAATCAGACTCTGGCAGGGTTTTTTGTTTTTTTGTTTTTGTTTTGAGCCAGAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAGCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCATCCTCCGGAGTAGCTGGGATTACAGGCGCCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTTGTCAGGCTGGTCTCAAAACTCCTGACCTCAGGTGATGGCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACCGCGCCGGGCCAGACTCTGGCATTTTAACAATCCCAGGTGATGTGTGTGCATGTGAAAATTTAAGTACCATTGGTCTAGATCCTACACTCTTTAGGATATCACCATCTGTAGGTAGAATATTTAAAGCATAATAGGTATGACTGATAGATTATTTTATCCAAAGTTCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGACTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGCTACAGGCACCCACCACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCACGCCCGGCCCCAAAGTTCTAAAGTAACATTCTATTGCTAAAGAAATCCTAACCTACTATGTAACATTTTTCTCTTAGTTAAAAATGTGAACTTATTATTAACCTCAATTTTTTAGAGGCCTCCAATCTTTTTAAAATATAAATATTTTTGATTGACAAATCATAATTATACACTTATGGGGGTATAAACCTCAATTTTTGTAACCCTATTTTGGCATTTTCCTGTCCTTACATCTCAGCTTAAATGCTCCCTCTTTTGGGAGGCCTTTTTCTGCCTTCAACATAGTAGAGCCTTTTCCCCCACCCCTCTGTAACATAATGCCCTGTTTTATTTTTACTGCTTTTATTTTCATGCTTTGTGGGTGTCCCCACTGGAGTGTAAGCCCTATGGGAGCAAGGGCTGACCTGTGACTGTTTTATCTCCAGGGCCAACAGCAGTGTTACTGTATAGTATGTACTCAATAAATATTTGTTGGCTTTATCTCTTATTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179859:ENST00000324348:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146341=zf-RING_5=WD(100=38.2),PF154511=DUF4632=PU(78.9=32.4)
A:
NA
C2:
PF154511=DUF4632=PD(19.7=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGACTCGGACTTGTGG
R:
TGATCTCCGCACAGTAGAGCA
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains