HsaINT0094904 @ hg38
Intron Retention
Gene
ENSG00000233198 | RNF224
Description
ring finger protein 224 [Source:HGNC Symbol;Acc:HGNC:41912]
Coordinates
chr9:137228152-137229638:+
Coord C1 exon
chr9:137228152-137228341
Coord A exon
chr9:137228342-137228621
Coord C2 exon
chr9:137228622-137229638
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGCTGGCTTCCCTCTGGCAGGAT
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATCTAGTTTCAAGGCTTTGTGGCTGAAACGGGAGCCCACGCCCGCCACAGCTGGCCACCTGCCTCTCTCCTGACTCCCGTGCAAGGCCAGTAATGCAACCCAGGAGGGAGCCGCAGGGCGCCCTGGGTCCCCCACTCCCTTCTCCGGCCACCCCGTGGCTGTGCATAGCTGCCCAGCAGAGCCCATGCAG
Seq A exon
GTAAGAGGCCTGGGCTCAGGTCGGCCAGGAGGGTGGGGGCCTGGAGCTGGGCCAGGGTGGTGCTGCGGGAACAGGAGGCTGCCCGGCTGGTGCCCACATGAACCAGAAGTGTGCAGACCCTGGTTCTGCCTGTGCCCGGTGCCACGCTCCCTCCCAGGTCTGCACGCACCACCCCCACAGACCCAGCGCCTGACCTCTGGGGTGGGCTCCTGGGGCCAGCACCCCATCCAGGCGGAAGGTCCTCGAGGCAGGCTGTCCACCGCTGGCTTCCCTCTGGCAG
Seq C2 exon
GATGCTGCAGCCGGAGGGCCCCCAGGCCTCGGAGGAGGGGGGCCCCCGGAGGAGAGGACAGACTGCATCATCTGCTGCTCGGCCTATGACCTCTCCGGGCACCTGCCCCGCCGCCTCTACTGTGGACACACCTTCTGCCAGGCGTGTGTGCGGCGGCTGGACACACCGGCGCCCGAGCAGCGCTGGATCCCCTGTCCGCAGTGCCGTCAGAGCACGCCCACGCCTCGCGGAGGGGTGGCCATGCTAGACCTGGACCTGGCTGCTTTCCTGGCGGTCAAGGCTGAGCGGGAGCCGGCAAGACTAGAACCCCTGCCCCTCACCTCCCTCAAAGGCAGCGCCATCACTCGGCAGCCAGCTGGGCTGTGCCCTGCCCTGGGACCCCAGCCCCACTTCCCCCAGCCCAGATACTGCTGCTGGGGCTGTGGCAGCCTCTGCTGCCCACCCCTAGGCAGCCCCGAGGTCTGAACTCTGGCCATTCCCACCCCTGCAGGGGAAATGCCTGCCTTGGAACCCCTGACCACACACCATCATGGGTTCAGCCCACTCAGAACAACCTGGCAGTAGCATCCTATACGCAGCTTCGTGTGGCCCAGCAGGGTGGTGTCATCCCAGCCGTGAACATCCCAGGCCACAGCCTAAGGTTGGGGGCTGGGAGGCTCCGCAGGAGGCTGGTGACCTCCCACCTGTCCTGGCCACAATTACCAGACCCCAGACTAGCCCGACCGGATGTGCCTGGTGAGGACACTGCTGTCTGAGTGGGCGGCAAGCCTGGCTTGGGCCTAGACGCAGCGCAAAGGATGGCTCCCAAGAGGATGCGAAGGCGTCCCGGGGGCCTGGGCTGCAGGCTGGAGGGGCAGGGCCGGTCTGGCTATGCCTGGCGGGCTGCCCAGAGCAGGTCTCCCCTCTCCCACAGACGTCCCCGGGGTGTACCGGGAGGGTGGCAAGACTACCTCCTTCCTCCCTGCCCTGCATGGCAGCCCTGTGAATTCACCCACTCAACAAAGCTCATGGAGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233198:ENST00000445101:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF136391=zf-RING_2=WD(100=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGCTGAAACGGGAGC
R:
AGGTGTGTCCACAGTAGAGGC
Band lengths:
308-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains