MmuINT0071373 @ mm10
Intron Retention
Gene
ENSMUSG00000089953 | Rnf224
Description
ring finger protein 224 [Source:MGI Symbol;Acc:MGI:2685603]
Coordinates
chr2:25234476-25236787:-
Coord C1 exon
chr2:25236632-25236787
Coord A exon
chr2:25236341-25236631
Coord C2 exon
chr2:25234476-25236340
Length
291 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCCCTCATACTGTCCCTAGGAT
3' ss Score
10.96
Exon sequences
Seq C1 exon
ACTCTAGCTTGATGCTGCCACCACCTGCCTCCTGCCGTCTTGCCCGTGTAGATAGTAATGCGAACCCAAGGAGGGAGCCATGAGGTGTCCAGGGTCCCCACCCCCTCCTCCAACAATCCTCTAGCTTGGAATAGCTTTCTGGTGAAGCGGATGCAG
Seq A exon
GTAAGAGAAGCCTGGGGTTCAGGAAGGCTAGGGGTGGGGTTAAGCAGGAGGGGCCACCGAGGGGGTCTCAACAGTGGGATAGAGTGCTGTTTCAGCCAATGACCACAGAAACAAGAGATATGCCCAGACTTTATGAGAGCCCAAGACCGCCACCTTCCCTCCAGGTGTGTAGGCACTGACTTTCTGGAGAGGCATTCGGGAGGCCAGCATGGGTCAAACTGTCACATAGGTGGGCACAGGTGAATTGTAGCTTGTGCTGTTGCTCTGTTGGTTCCCTCATACTGTCCCTAG
Seq C2 exon
GATGCTGCAGCCTGAAGGCCTCTATGCCTTGGAGGAGGGGACAGCCCTGACAGCCTCACGGAATGACTGCATCATCTGCTACTCTGCCTATGACCTCTCAGTACACTTGCCTCGACGTCTCTACTGTGGCCACACCTTCTGCCAGGCATGCATGCAGCGGCTGGATATGCCAGCCCACGAACAACACTGGATCCCCTGTCCACAGTGCCGACAAAGTACCCCTGTGCCCCGTGGAGGGGTGACCATGTTGGACCTGGACCTGGCTGCCTTCTTGGCAGTCAAAGCTGAACGGGAACCATCAAAAATAGAACCCAGGTCCTCTGTCCCCCTCAAAATCAGCACTACCATCACTCAGCAGCCAGCTGGACTCTACCCCACCTTGGGCCCCCAACCCCACTTCCCTCAGCCTGGATGCTGCTGCTGGGGTTGGGGAAGACTGTGCTGGTACCCCCCTGGGAACCCCGAAGTCTAAATTCTGGCCATCCCCACCCCCACAAAGGAAACTCTGCTTAGTAGTTTGTCTACCTTGGATCGTACACAATGCAAACAGAACAGCCTGCTAGCAAGACAACTCTCCTATGACTGTACACAACCAAATATAGTGGTGTCACCTTGACCAGGAACATTTCGAGCCATAGCCTAAGGTCAGAGTCAATGGCCATGGTGCCATAAGACTGCACACTAGGCTGGGGAACTCCCATTCTACTGGCCTAGATTCTCGTACCCCAAAGTAGTCTGACTCTGGCTAGCCAACATCCTGCTGTCTATGCCTCTTGTAAACCCAGGACTCAGCTGAGAGAATGGCTCCCAAGAGTCTGTGGGGGTGAGTGTATGGGCCTGGGCAGGGCCAGGCTATGGGTGTATGTAAGTGGCTGGCATCAGAGTAGGTCTTCCTCTCTATAAACATCCAGAGGTATGAATCAGGAGCGAGGGCAAGTTGCCTCCTCTATTCCTGGAGTCTCATGTGTTACTGTCTATCCAACAATGCTCACTGAGCTCTGTTCTCTGTCTGCAGCACAGGTACCAAAGAGGGGTGCAATGGAGGGCTAGCTCTGACAAGGGGTCTTGACTGAGATCTCACTGCTCATTATCCTATCTCAAGACTCTCAGCTTTCATCTACCACTGGTGACTATAATACAGACCCTTTAGTAGGTGATAGAGGCTACAGATGACTGACAACCCCAAGACCAAAGCTGTAAGCTTCCATCCTGCTAGAAAGGCTGTATTCAGGAGGCCCTGGGAGGAGCCTCCTGGGCAGTGGATGGGAGGCTAGAGAATTTGCTGAATAGACATTAAGAAGACTCCTTCCCTGGGCAAAGTCCCTCAAGCAGCTAGGTTGGGCAGTGAGCAGAGAAGGCTGCTGGAACTTGCAGGGGAGGGCCTAGTCCTCATCCCAAGGTCTGGAAAGGGCCTGATCCACAAAAAGGGACATTTCACATGCATGTGCAGACAGGACAGTGCTCAACTGGGAAAAGATACTCAGATAAGGGTCGGGCAATGAGCTCTGCCCACCTCTTTCCATGCAGATAGAGACTCCAAGTCCTGGACCCCCTGCTGGGCTCCCCAGAAAGCCCTTCTAGATCTGGCCCCACCCTTAAACTCAGATTTGAATCTGCTGACCTCAGAGCCTCCGTGCATTCCCAGGCCACCTGAGGAAATCCATCTTCCACGCCCACCTGGTGCAAAGGGCTTCTCTCTTGTCTCTCTGTCAGGTGCTGAGATGAACATGATAAGGTTTGCAGAGTTCGCAACCCAGAAGGACGGAGAAGGGCAACTTTCTTGTGGGGTTTCTAGGCAGCCCCAGCCAGAATGACAGCATCCTGCCTGGGTGGTGTAGAATGTCCATTAAATGTATCCAATGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000089953:ENSMUST00000091318:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0231811=FYVE_2=WD(100=46.5),PF136391=zf-RING_2=WD(100=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTTGCCCGTGTAGATAG
R:
TTGTTCGTGGGCTGGCATATC
Band lengths:
306-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types