HsaINT0094985 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:7981507-7982484:+
Coord C1 exon
chr19:7981507-7981827
Coord A exon
chr19:7981828-7982357
Coord C2 exon
chr19:7982358-7982484
Length
530 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGC
5' ss Score
6.64
3' ss Seq
CCCACCTTCCTCTCCCCCAGTGT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCGGCCTTGGCCCGTCCCTCCCCGCGCTGGGGCCTGGCCCTGCACCGCTGCTCAGTGACGCCGTCCTCACGCCCGGCCCCGGGGCCCGCCCTGGCTCTGCTGCGTGAGGGCTGCCCCGCCGACACCTCTGTCGCCTTCCCGCCACCGCCGCCGCCGAGCCCGGGTGCCGCCCGCCCCGCGCGTTTCAGCTTCCGCCTGCGCCCGGTCTTCAACGCCTCGGTGCAGTTCCTGCACTGCCAGCTGAGCCGCTGCCGCCGCCTCCGGGGAGTCCGCCGGGCGCCTGCGCCTCTGACGCCGCCGCCGCCGCCGCCGCCATCGCGG
Seq A exon
GTGCGCGGGCGCAGAGCCTGGAATCCGGGCGCTGGGGCCCTTCGGGGGCTGGGCACGGGCGACTCTGGCAGTGGAAAGAGGATACTCTCGGGGTCTGAGGATCTGGGGGTTGGGGGAGGTGGGGCGCAAGGGTCCATCTCTGCCGACAGAGTTTCTCCGGGGACAGTGTGGACACTGGGTTCCCCCATGGACAGCTCTGGAATCCTTCAGGGCTGGGGGTTGGATGCAGAAGGCCACTAAGGGGACACATTTCTGGGAACCTGGTGCTGGGCCTCACATGCTAGGTGCTGGGAGACGCGGACCATGCGATCTTGTGGGGCTGGGATTTGGGGTCCTTAGGGGCTGGGCGGCTAGCCACTTGTATGCGTAGGGGCTGGGCTCAGGGCACCCTAAGGGGCCGGATTTCCAGGGGTCCCATCTTGGCTGTGGTGGAGAGCTGGACTCAGGTCTCTCTTGGGGGCCCTGGGGACCAGAGCCACGATCCCGGTGCCCTGATGTCCCCGTCTCTTCCCCACCTTCCTCTCCCCCAG
Seq C2 exon
TGTCTGCCTCAGGACGAGGCGTGCGCCGACACTGGCAGTGGCAGCGCCGAGGGCCTGGCTGCTGACGGCCCCCACCTGCACACGCTGACGCAGCCTATCGTGGTCACCGTGCCGCGGCCGCCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC645781:NM_001195259:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTGCTGCGTGAG
R:
CACGGTGACCACGATAGGCT
Band lengths:
342-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)