MmuINT0070224 @ mm9
Intron Retention
Gene
ENSMUSG00000089736 | Gm14378
Description
predicted gene 14378 [Source:MGI Symbol;Acc:MGI:3833469]
Coordinates
chr8:4249426-4250381:+
Coord C1 exon
chr8:4249426-4249746
Coord A exon
chr8:4249747-4250266
Coord C2 exon
chr8:4250267-4250381
Length
520 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGC
5' ss Score
6.64
3' ss Seq
TTTCTTCCCTTGCAACCCAGTGT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCGGCCCTGGCCCGTCCTTCACCGAGATGGGGCCTAGCCCTTCACCGATGCTCAGTAACACCTTCTTCACGCCCGACCCTGGGGCCTGCCCTGGTGCTTCTACGTGGGGGCTGCCCCGCCGACGACTCTGTCAGCTTCTCACCACCTCCACGCCCGGATGCTGCTAGCGTCTCACGCTTCAGCTTTCGCCTGCGTCCGGTATTCAATGCCTCAGTACAGTTCTTGCACTGCCAGATCAGCCGTTGCCGCCGTCGCAGCAGTCACCACCGCCGAGCTGTCCGCCTGACACCAGTGCCTTTGACCCCACCAGCACCATTGCGG
Seq A exon
GTGCGCTAACAGAAACAGTAATCTCGGCACCTGCGGAATATTCTCTAGCTAGGCAAAGGCATTTCTGGCAGCTGAGGGACCTTAGGAAGCAAAGTGCTTTATGGTCTGGGTCCCTCTCACAATGGGTACTGGGTATAGAGATATCCCTCATGGGGCTCTGCAGAAGGATTCCCGGTAAGTAGACTAGAAATGTACAGCCTGTGCTCTAAGATCCTTGGGTGGGATCTGGAGTCCTTTTAGGGCTGGAAGGCTGGATTCAAGAAAACACTGCGATCTATCTAAACTTCTGCACATTTGATTTGCAGGCCTCACTTGAGACCTAGAGGTTGACATATGGGGTGTTCTAGGGCTGAAACCGTTTTTAGGTTTAGGTTTATGGTTATGGTTACGCCCAGGAGTCCCGTGGTAACCTCCTAGCTCTAGTGGAAAGCTGGAAGCTTAAGCCCATCATAGGAGCCCTGGGAGACCAGACCCAGAACCACCAAGGCACTGAAGTCTGGTTTCTTCCCTTGCAACCCAG
Seq C2 exon
TGTCTGCCTCAGGATGAGGCATGTGCGGGCAGCAGCTTGAGCCTTGGTACCGACAGCCCCCACCTGCACATGCTGACACAGCCCATCGTGGTCACAATACCTCGTCCGTCCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000089736-Gm14378:NM_001195258:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.513
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(62.4=86.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCTTCACCGATGCTCAG
R:
CTGTCGGTACCAAGGCTCAAG
Band lengths:
343-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: