HsaINT0094988 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:7982942-7983980:+
Coord C1 exon
chr19:7982942-7983014
Coord A exon
chr19:7983015-7983801
Coord C2 exon
chr19:7983802-7983980
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GCCTCAGCCACCCCTCCCAGGGA
3' ss Score
4.45
Exon sequences
Seq C1 exon
CGCCCCACGCCCCTGGCCCGCCCGCGAGAGCCTCGCCCAGCGGTCCCCAGCCCAGGAGGTCCCAGTGAGGAAG
Seq A exon
GTAGGTATGGAGGTGGAGGGAGCTGGGTGAGGTAGGAGATCTGACAGTGACGCTTCCTAGCGCTTAGTTCGTGCCAGGCACTGTGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGGCGGGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGCACACCCGACCTCAGGTGATCCTACCGCTTCGGTCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGCGCCCAGCCTCCAGGCACTGTTGTAAATGTTTTACGCCTATGAACTAACTTAATCCCCTTAACCTCTAGGCGGACACTATTATAATCCCCATTTTAGAGACGAGAATGATGAGGCATTCTCTGAATTAAGTAACTTGTCAAAAGTCACAATACTGGGTGGAGCTTGGATTCGAACTCAGGCAGTGGGTCACCCGCGGCAGGCGCGGGCTTTGGGTCGAGCCAGGGGCATTAGGTGAGGAGAGGCACTAGGCGAGGAGAACTCAGCATTCGGACCCGGCTCCCACTCTCACCCCGGCATGCAGACCGATGGAAGAGGCTAGTGGTCTGCTGGGAAGGGAGGTGGCCCGCGTAGCGTCCCCTCCCTCGCTGAGCCTCAGCCACCCCTCCCAG
Seq C2 exon
GGATGGTGCGCCCCCAACATGGTCCGGAGATACACCCAGCTACCAATTCGGGACCAGGACCAACAGGACCGGACCCGCCTCCCTGGACCTCGGACCTGATGAGGCCACGACCCCTGCGCTTCTCTCCTCCCCCTGTCCCTCCCACCTGTGCTCAAAATAAACCTCTGGACTGACCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
-LOC645781:NM_001195259:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGCCCAGGAGGTC
R:
GCCGGTCAGTCCAGAGGTTTA
Band lengths:
208-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)