HsaINT0094988 @ hg38
Intron Retention
Gene
ENSG00000260001 | TGFBR3L
Description
transforming growth factor beta receptor 3 like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr19:7918057-7919090:+
Coord C1 exon
chr19:7918057-7918129
Coord A exon
chr19:7918130-7918916
Coord C2 exon
chr19:7918917-7919090
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GCCTCAGCCACCCCTCCCAGGGA
3' ss Score
4.45
Exon sequences
Seq C1 exon
CGCCCCACGCCCCTGGCCCGCCCGCGAGAGCCTCGCCCAGCGGTCCCCAGCCCAGGAGGTCCCAGTGAGGAAG
Seq A exon
GTAGGTATGGAGGTGGAGGGAGCTGGGTGAGGTAGGAGATCTGACAGTGACGCTTCCTAGCGCTTAGTTCGTGCCAGGCACTGTGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGGCGGGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGCACACCCGACCTCAGGTGATCCTACCGCTTCGGTCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGCGCCCAGCCTCCAGGCACTGTTGTAAATGTTTTACGCCTATGAACTAACTTAATCCCCTTAACCTCTAGGCGGACACTATTATAATCCCCATTTTAGAGACGAGAATGATGAGGCATTCTCTGAATTAAGTAACTTGTCAAAAGTCACAATACTGGGTGGAGCTTGGATTCGAACTCAGGCAGTGGGTCACCCGCGGCAGGCGCGGGCTTTGGGTCGAGCCAGGGGCATTAGGTGAGGAGAGGCACTAGGCGAGGAGAACTCAGCATTCGGACCCGGCTCCCACTCTCACCCCGGCATGCAGACCGATGGAAGAGGCTAGTGGTCTGCTGGGAAGGGAGGTGGCCCGCGTAGCGTCCCCTCCCTCGCTGAGCCTCAGCCACCCCTCCCAG
Seq C2 exon
GGATGGTGCGCCCCCAACATGGTCCGGAGATACACCCAGCTACCAATTCGGGACCAGGACCAACAGGACCGGACCCGCCTCCCTGGACCTCGGACCTGATGAGGCCACGACCCCTGCGCTTCTCTCCTCCCCCTGTCCCTCCCACCTGTGCTCAAAATAAACCTCTGGACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260001:ENST00000566166:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAGGAGGTCCCAG
R:
TCAGTCCAGAGGTTTATTTTGAGCA
Band lengths:
199-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains