HsaINT0095042 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:233388126-233388655:+
Coord C1 exon
chr2:233388126-233388288
Coord A exon
chr2:233388289-233388481
Coord C2 exon
chr2:233388482-233388655
Length
193 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCCTGTCCCGCCCGCAGCAGCCT
3' ss Score
2.44
Exon sequences
Seq C1 exon
GGTGACTCGGGAGGCCCCCTGACCTGTTCTGAGCCTGGCCCCCGCCCTAGAGAGGTCCTGTTCGGAGTCACCTCCTGGGGGGACGGCTGCGGGGAGCCAGGGAAGCCCGGGGTCTACACCCGCGTGGCAGTGTTCAAGGACTGGCTCCAGGAGCAGATGAGCG
Seq A exon
GTGAGCGCCCTCTTTCCAATGCCCCGTCCCCAGTGCCCCAACGGACAACCGTGGGACAAGCCCGTTTCCACCCGGCCCATGCCCATTCCCAGCTCCCTTCTGCCTCGGGAAAGCCTGTCTCCTTCCGGGGAAGGAGTGAGGGGGCTAGGGCCCCAAACAGAGGGTGAGCTGACCCCTGTCCCGCCCGCAGCAG
Seq C2 exon
CCTCCTCCAGCCGCGAGCCCAGCTGCAGGGAGCTTCTGGCCTGGGACCCCCCCCAGGAGCTGCAGGCAGACGCCGCCCGGCTCTGCGCCTTCTATGCCCGCCTGTGCCCGGGGTCCCAGGGCGCCTGTGCGCGCCTGGCGCACCAGCAGTGCCTGCAGCGCCGGCGGCGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC646960:NM_001195129:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACCTGTTCTGAGCCT
R:
GCACAGGCGGGCATAGAAG
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)