GgaINT0031586 @ galGal4
Intron Retention
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15073283-15073705:+
Coord C1 exon
chr9:15073283-15073442
Coord A exon
chr9:15073443-15073516
Coord C2 exon
chr9:15073517-15073705
Length
74 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
GCAGCGCTGTGCCCTCACAGCTG
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGTGACTCGGGTGGTCCGCTGGTGTGCCAGGACCCCTCCTCGCACAGCTTTGTCCTCTATGGCATCACTTCGTGGGGTGATGGCTGCGGCGAGCGGGGCAAACCAGGTGTCTACACTCGCGTGGCTGCCTTTGCCGACTGGCTCAGCCTGCAGATGAACC
Seq A exon
GTGAGTGCCAGTGGGGGGCACGGGGTGGCATCCCAGGGGGCTCAGCATCTCACGGCAGCGCTGTGCCCTCACAG
Seq C2 exon
CTGTTCCTGGCAGCCGGGAGCCAAGCTGCTTTGACCTGCTGGCCCTGTCCCAGCTGGCCCCCGAGCAGCAGCCCCTCGAGCGCACCCGTCTCTGCTCCTTCTATGAGAGGTCCTGCCGGGCCGCCCCGGGCCAAGCCAGCTGCACACACATTGCTGATGAGACATGCCGTGCCCGGCTGAGGCGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463:ENSGALT00000007102:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.4=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAACCAGGTGTCTACAC
R:
TAGAAGGAGCAGAGACGGGTG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]