RnoINT0118825 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94281942-94282426:+
Coord C1 exon
chr9:94281942-94282104
Coord A exon
chr9:94282105-94282246
Coord C2 exon
chr9:94282247-94282426
Length
142 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GATCTGGCATCTGCTTGCAGCGG
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGTGACTCCGGGGGCCCTTTAACCTGTTCTGAGCCCGGCCCGCGCCCCAGAGAGGTCCTCTTTGGAGTCACTTCTTGGGGAGATGGCTGTGGTGAGCCTGGGAAGCCTGGGGTCTATACCCGTGTGGCCGTGTTCAAAGACTGGCTGCAGGAGCAGATGAGCG
Seq A exon
GTGAGCATCCCCCCAGCCAATGGTCCCTCGGACAGCTCTGGGCGAGCCGGTTTCCATCCCTTGTTCTGATCTCTGTGGAGGAGCTGCGGATGGGTGGCTTGTAGACCCACATAACAAGGGGTGATCTGGCATCTGCTTGCAG
Seq C2 exon
CGGGCCCCTCCACTCGCGAGCCTAGCTGCAGAGAACTTCTAAATTGGAACGCTCGGGAAGAGGAGCCGTTCGCCGACGCCCCGGGCCTCTGTGCCTTCTATGAGCGCCAGTGCCTAGGGTCCGAGAGCTCCTGTGCGCGCCTAGCGCTCCAACAGTGTGTGCAGCGCCGGCGGCGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(21.1=87.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCCTTTAACCTGTTCTG
R:
GCTCATAGAAGGCACAGAGGC
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]