HsaINT0095237 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:150104672-150109558:+
Coord C1 exon
chr7:150104672-150105576
Coord A exon
chr7:150105577-150107247
Coord C2 exon
chr7:150107248-150109558
Length
1671 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTTTGTTTCTGTCGACAGTTG
3' ss Score
9.65
Exon sequences
Seq C1 exon
GGACTGGTGATTGCAGCTGGAAGTGCCCATGACCGAGCTGGCGTCCTCCGGGGGCGGGTCCCCTGCGGGGGACGGGGAGGAGGGTCTGGGGGACGAGCGAGGCCTGGTCATCCACCACCCTGCAGAGGAGCAGCCCTACCGCTGCCCGCTGTGCGGCCAGACCTTCTCGCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGCCGGAGCGGGCCGCGCGGCTGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAGCACAACCTCGAGGTGCACCAGCGCACGCACACCGGGGAGCGGCCCTTCCCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAACCTGCTCACGCACCAGCGCATCCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGCCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCGCGCCGCACCCGCGCCGCCCCGGCGTCTTCGGGGAGCGGCGGCCCTACTTCTGCCCCCGCTGCGGCAAGAGCTTCGCGCGCGAGGGCTCGCTCAAGACCCATCAGCGCAGCCACGGCCACGGGCCCGAGGGCCAGGCGGCCCACTTAGGACGCGTGCTATGATGCGCCCGGGGCCTGCTGCCGACGGCTGCTTCCCGCCCCGCACGTGCGTCCCCGACCCCTGGAGATGGCCCTGGGCCGCAGCTCCCTCTCTAGATGGGATCCCGGGAGAGGGGCAGCGCTGGCTTGGGCTCTTGAAGGTGTGGGCCGCCGCCAGGCTCCGGCCGCCCGCTCGCGTTCCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTCCGGCTCCTGCCATGGTTCTCCTTCTCTGGCCCATCCGGCCTAGAGCAG
Seq A exon
GTGAGACCTGCGGGGCTGGCCAGAGCCCCTCTCAGGGCTGGGAGTGGTGGGGGTGGAGTGCGTGGTGTTGATTCTTGATGGCAGGTGGGGCGGTCTGGGTACCGGGCTGTAGGTTTCTCTGTGATGAGCTGCTTACCGGATCTTCATCCCCAGAATGTCAGAGTTGAAAGAGACTTGGAGAGGCCACTTTCCACAAACCCCACGCCCAACCTCAGCCCCTAGGCCTCCTGGCTCCTGTACACACTCTCTGCTGTCCTTGAGATGTCATTTCACTTCATGTTTCAGTTTACTCATCTGTAAGTTGGGGATATAGATGAGGGACTCTTCCTCGCTGGGATATATTGCAGCTACTGGATGAGAGAGGGTGAGGTCACTGGTGCACAGAGCCTTAGTTGATTCTGCCACACCATGTGCCACTGACTGTGCCGGGCTGGGCTCTCCCAGAGACACACATGAGGACCGCAGGCCCTGACACGGGGTGCTCACACTCGGTGTGTGACGCGGGGCCAACCTACAAAGTGCTCTGGGGTGAGACCGAGGAGGGTGACTGGTTTCTCTTCGTCACCCAGGGGAGTTTGATGGCTTTGAACCAGGTCATGGGGACAAATAAAATTGTTCTAGGAAGAGCAAGTGTGTAGAAGGGTGTTTTCAAGGGAGGGGGGGTCCTGATAGTTCAGTGACTGTCTCCAGGTGTCCCAAGGGGAGGTTTGCCCTACAAAGGACTTCGTGGTCAGGGGGTGGGGACACTGAGATTTTTAATGAGATGAGTGCTATGATCTCAGACTTATGCTTTAGGAGGAGAATCAGAGGCACTGTGAGGACAGACTGATGTGGGAAGAGCTGGAGCCTCGAGGGGCTTGGGTCATCTGGGCAAGAGAACATAAGGCCCCCAGCTAAGAGGCCTGGCCAAGGTCTGGCAGTGAGAAAGGGGGCAGCCAGGACTCTGCTCCAGGACCTCTGGTTCCAAGCTGGCGCTCTGAGGCACGGGCCTCTTCAGCCTTTTGGCAGATGAGGAAACAGGTTTGCCAAGCTTGCCTACACCACAGTTGGTACTTAGGGGTACAACAGGTGGAAGCCAGGGCTTTGTTTTGGATTCTGAATCCCAGAACCTTTTAGCTTCACTGCTTAAAAAGTGGACGATGGAGCAGGGAGGATTTGGGGCCATGTGATAGGAGCTGGGGCAGGGGTGTTAGGGGTGGTACGGGTGTTTGAAGGGGACATGGCATCCCTGGGAGTGGTTTGGGAGGAAGGGAGCTGGGGCTTCGAGGGGACCTGCACATTCAGTCCTGTGCTGGGTGCTGGAGACTCGTCCCTCCCCACTGCCCCCTCTGCCCATCCTCAGTGCTATGTGGCTATGGCTCCTCGGAGACTGTCCTCTGCCTACCACTCCCAGGTGCTGTAGACTAGCATTGGTGGCAAAGATGAAATTAAACAGGGGCTTCGGACACCTGGAGTCAGTCACCAAAATGCCCTGAACCCAAGGTGTCTCATCTGTAAATGGGATTCGTAATCCTTGCAGTGCTTGGTAGGGGACAAAGAGGATTCATTCAAACCCTAGGACAGATTCAGGGTAGGCCAGCTGATCGCTCCCTCCTAGCCCCAGAGGGGTGGCTGGGCAGGGCCATGTCACGGCTCCACACCTGATCCTGATCTCTTTGTTTCTGTCGACAG
Seq C2 exon
TTGCAGAGTGGGCAGGATCTTAAGACCCGATAGGTGCAGAACCCATCTGGACACGGAGACCAGGAATGGAGTTCCATGGAGGCCTGGCTGGCACTGCACCCGGGCATGAGGACACATCCAGTAAGAAGACCTGCCTCAAGAGGTGCACTGCGGTGACCAGTGGAGGTGACTGGTTGGAGCCTGGAATTGGAAGCAGATTCCAAGCTCTGGTGGACAAACTCTCCAGGCCTGGTGGGAATCACAGCTGGGGCAGACCTCATCCTGGCTGCCTGGCCACAGGCCCCCACTCTCTGCCACTGGTGGTAGGACGATGCCTGTGTGGAGAGCTGGCTTCTCTGCTCCCGCCTGGTCCACCACTTGGCTAGAGTTCAGAGACAGGAAGTGATTGGTCTAAGCTAACACAGCAAGTTGGTGGCAGACCTGGTTCTAGAGGCAAAACCTTCTTCCAGATGTGAATGAAACCTGCAGGCTTCATTTTCCTTTCTGAGCAGTGCTTCTTAGCTCTTTGGAGACACGAAGCCCTTGGAAAATCTGATGAAGGTTACGGACCTTCCCTAGGAAAACAGATAACTGACGTAGACTCAAAAACCCCAAGCAATTTCAGGAGCCACTGGACTCCCTGAATGAAACCCATCCCTGGACTCCAGGCTAAGAACCTCAGCCCTGGGGACTTCACCTGCTGCCCTTTCCTTACCTGTCACACATTGAGCCCCGAGTCAAGGCCACTGTACAAGTAGTGCCCCTCCCTCCCCCTGGCCAAGCCTCCTTCCCTTGTTCAGGAATAAAGAATTCCGAGGAGCCCTTTTTAGTCATTCCCTTCTCCCAGACCTAACGAATGGTGCGTCAGGTTTCTGGAGCCTCATTTCCCTTCCCCAGACATTGGCAGAGGTCCCTTGGGCTAGATTTTCTCTTCTGGTTTTGTTTCTTGTTCTGCCTGACTGGCCGCTGGCTTCCACAAAGGAGCCCTTTGCTCCTGGCCTGGGCTCTGATTTCACTGTGTGGTCTCAGGGGAAGCTGGACTGCTGTGGACGCTGGTGGGAGCTTGAGTCTGGTCTGAGTCTGCCCCAGGGAGAAAGAATCCTGCTTCCACCAACCAAGCCCAGTCAGCGGTTCCTCCCAGCTGGCCAAGTGTTCAGCCCAGTGGGCTGGGGAGGAAGAGGATGAGGGCCTCGCTCCTGGTGCCTGTGGCTCTGGGCAGGGTGAGAGGTCGGTGGAGGATCTTTCTGTGTGTTCTCTGAGTATGCAGCAGTGCAGTTGAAGGGAACAGGGCCCAGGCAGGCAGCAGGGCAAGGACTCCTCCCATCTTCACACCTGAACCAGTCAGCCTGGAAGCTACAAGTTCTCACCTGCCTCCCCAGAATGAACATCAGAAAAGGCAAAACTGACCAGGGCTGGGATGGGTTTGGGTCAGCGTGGTTGGAGGGCAGCCTGTGGATCCCTGCACTGGAGTCTTGCTGTCTTCGATGCAGGTTGGATCATACATTGTTACCTCCTACTGTATGCCTCACCCTGGAATAGCAGAATGCTCAGGGGGAGATCCGAGAACGAGAAGGTGCTCCCAGCCCCAGGAGCTTCCAGTCTGGCTCTGATCCTTGGCCGACCTAGAGGAAACCTCCACACACGCCCCTTTTGTGCTAATGGTGCAGTTTGTGTCCCCCTCTGCCCATCACTGTGCTGTGCTTGTTCCTGCCTCTGTGCCTTCCCCTATACTGCTCGGACATGTCCCCTTTCCTCTCCTCTACCCAGCTAAGCCCTTCTGATCCACGGGGCCCGGCTTCCCAAACCACCCAGCCCACATTCCTCCTTCCTGCTCCGAACAGGTCCGGTGTGAGCCCCTGCCCCCGAACTGCGTGCTGTCCCATGGACGCTCCAGTCTCTTCCGTGTGTGTCTTGAGTCCCTAACTAGACAGTTAGCTCCCTGAGGGCAAGGGACTGTCATTTCCTCTTGAGTCCTACCAGGGTCTAGCACAGGACTGGGCTCCTAACTCTCAGGAAACACTTGTCGGCTGACTGGTGCCTCAAGCGCTGGAGCTTGTCGGTGGCCGGTAATGGGCAGTGCACGTGGGGAGAGGGTATGTGAGTTAACTCAAGGGTGCCTTTTCTTGGGCTGTGGGCTGGCTCCCCTGGGTCAAAAGTGGATGTCGGAGGCCTCAGGCTCTTACCTCCTTGGGGCAGTGGGAGCATCAGGGACCCCCACCCCCACCCCGGCTCTGCAGGAGTGCACGGAAGTGGTCGTCCAGCCTGGATATTTCTACAGGTTGCTGACTCCTGCGGGAGCTGACTGAGTGGAATAAATGTTCTCTCAACATCA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC728743:NR_027237:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGACGCGTGCTATGATGC
R:
AACTCCATTCCTGGTCTCCGT
Band lengths:
356-2027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)