HsaEX0074338 @ hg19
Exon Skipping
Gene
ENSG00000196456 | ZNF775
Description
zinc finger protein 775 [Source:HGNC Symbol;Acc:28501]
Coordinates
chr7:150104672-150107685:+
Coord C1 exon
chr7:150104672-150105576
Coord A exon
chr7:150105730-150105872
Coord C2 exon
chr7:150107248-150107685
Length
143 bp
Sequences
Splice sites
3' ss Seq
TACCGGATCTTCATCCCCAGAAT
3' ss Score
7.46
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CGCGCAGTGCGGCCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCGCGCCGCACCCGCGCCGCCCCGGCGTCTTCGGGGAGCGGCGGCCCTACTTCTGCCCCCGCTGCGGCAAGAGCTTCGCGCGCGAGGGCTCGCTCAAGACCCATCAGCGCAGCCACGGCCACGGGCCCGAGGGCCAGGCGGCCCACTTAGGACGCGTGCTATGATGCGCCCGGGGCCTGCTGCCGACGGCTGCTTCCCGCCCCGCACGTGCGTCCCCGACCCCTGGAGATGGCCCTGGGCCGCAGCTCCCTCTCTAGATGGGATCCCGGGAGAGGGGCAGCGCTGGCTTGGGCTCTTGAAGGTGTGGGCCGCCGCCAGGCTCCGGCCGCCCGCTCGCGTTCCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTCCGGCTCCTGCCATGGTTCTCCTTCTCTGGCCCATCCGGCCTAGAGCAG
Seq A exon
AATGTCAGAGTTGAAAGAGACTTGGAGAGGCCACTTTCCACAAACCCCACGCCCAACCTCAGCCCCTAGGCCTCCTGGCTCCTGTACACACTCTCTGCTGTCCTTGAGATGTCATTTCACTTCATGTTTCAGTTTACTCATCT
Seq C2 exon
TTGCAGAGTGGGCAGGATCTTAAGACCCGATAGGTGCAGAACCCATCTGGACACGGAGACCAGGAATGGAGTTCCATGGAGGCCTGGCTGGCACTGCACCCGGGCATGAGGACACATCCAGTAAGAAGACCTGCCTCAAGAGGTGCACTGCGGTGACCAGTGGAGGTGACTGGTTGGAGCCTGGAATTGGAAGCAGATTCCAAGCTCTGGTGGACAAACTCTCCAGGCCTGGTGGGAATCACAGCTGGGGCAGACCTCATCCTGGCTGCCTGGCCACAGGCCCCCACTCTCTGCCACTGGTGGTAGGACGATGCCTGTGTGGAGAGCTGGCTTCTCTGCTCCCGCCTGGTCCACCACTTGGCTAGAGTTCAGAGACAGGAAGTGATTGGTCTAAGCTAACACAGCAAGTTGGTGGCAGACCTGGTTCTAGAGGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196456-'17-18,'17-17,18-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGATGGGATCCCGGGAGA
R:
AACTCCATTCCTGGTCTCCGT
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)