MmuEX1002776 @ mm10
Exon Skipping
Gene
ENSMUSG00000053297 | AI854703
Description
expressed sequence AI854703 [Source:MGI Symbol;Acc:MGI:2141510]
Coordinates
chr6:48626764-48633689:+
Coord C1 exon
chr6:48626764-48627113
Coord A exon
chr6:48630172-48630315
Coord C2 exon
chr6:48631540-48633689
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACCCGATCTTCATTCCCAGCAT
3' ss Score
6.25
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCACTGGTCCCAGAGTCCCAGCCAGCTTCCAGGAGCTGGGGTAGGTCCAAAGCCTTAGCTAGCCTGGGGATGAAGAAGATGAAGATCTTGCTCCTCCGTAAAGAAGGATGGCCAGGGATGGGGTTGTTGGGACACTGAGGTGACTTCCTGCAAGGCAACGCTGGCCCTAGAATCTGGACCCCCCTTTTTTTTTTTCCCAGGCAGGCGCAGCGCTCGCTGCCTCCCTTTTCCCCGCCAGCCAGGTTGTTGGCGCGTTAGACCTCCCAGCCTCACGGGGCTGCTGTGCGGCTGCGACGAAGCTGGCGACTGCGGCGCTGCAGCAGAGGCAAGGGCTCCAGAGGCGGCGCCAC
Seq A exon
CATGTCAGACTTGAAAGCTACTTGGAGAAGGTCACTTGCCACGGTTCCCAGACCCAAGCTCGGTCCCCAAAGCCTCAGCCTCCTGTACCCACTGCCTGGTGGCCTTGAGAAGCCATTCCACTCCATGTCTCAGTTTGCTTATCT
Seq C2 exon
ATACGAAGCCAACAGGACCTCATGGCCCAGAACCTGCAGGGCGCATCTGGGCATGGAAACTAAAACTGGAGTCTCGTAGGTCCTGGGTTCCTGACCTGAAGACACGTCTCCTCAGAAGTCCTACCTCTGGAGGTGCCCTGTGTTGGTAGAGCATGGGATTAGAGGCTGATTCCATGCCTTGGTGGGAAGACTCCCCAGATCTGACTTGTCACAGCTGGGCAAGCCTCATTTGGCTTCCTGATCCTAGACCTCAGCTCGGGGGTGGAGGCAGACATCACCTGTGTGGAGAAGTGGCTTCTCTCCTCCAGCCTGGCTCAGCCCTTGGTTGAAGGGCAAGGACAAGGTGTGACTGTTGTGTACCGTTGCAGCAAGTTGATGGCAGACTGGGCTCAAGAGGCAAAACTTCCCTGATGACATGGAGAGCACGTGAAGGCTTCCATGCCCGTTCCCAGCTAGACAGGTGACTGCTTCAGGGGCTTGTGGCCCTTTAAGTGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053297_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGGACACTGAGGTGACT
R:
CCATGAGGTCCTGTTGGCTTC
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types