HsaEX0074338 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr7:150407584-150410058:+
Coord C1 exon
chr7:150407584-150408488
Coord A exon
chr7:150408642-150408784
Coord C2 exon
chr7:150410008-150410058
Length
143 bp
Sequences
Splice sites
3' ss Seq
TACCGGATCTTCATCCCCAGAAT
3' ss Score
7.46
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CGCGCAGTGCGGCCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCGCGCCGCACCCGCGCCGCCCCGGCGTCTTCGGGGAGCGGCGGCCCTACTTCTGCCCCCGCTGCGGCAAGAGCTTCGCGCGCGAGGGCTCGCTCAAGACCCATCAGCGCAGCCACGGCCACGGGCCCGAGGGCCAGGCGGCCCACTTAGGACGCGTGCTATGATGCGCCCGGGGCCTGCTGCCGACGGCTGCTTCCCGCCCCGCACGTGCGTCCCCGACCCCTGGAGATGGCCCTGGGCCGCAGCTCCCTCTCTAGATGGGATCCCGGGAGAGGGGCAGCGCTGGCTTGGGCTCTTGAAGGTGTGGGCCGCCGCCAGGCTCCGGCCGCCCGCTCGCGTTCCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTCCGGCTCCTGCCATGGTTCTCCTTCTCTGGCCCATCCGGCCTAGAGCAG
Seq A exon
AATGTCAGAGTTGAAAGAGACTTGGAGAGGCCACTTTCCACAAACCCCACGCCCAACCTCAGCCCCTAGGCCTCCTGGCTCCTGTACACACTCTCTGCTGTCCTTGAGATGTCATTTCACTTCATGTTTCAGTTTACTCATCT
Seq C2 exon
TGCTTGGTAGGGGACAAAGAGGATTCATTCAAACCCTAGGACAGATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000284048-'22-6,'22-5,23-6
Average complexity
C3
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACCCCTGGAGATGG
R:
TGAATCCTCTTTGTCCCCTACCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development