HsaINT0096438 @ hg38
Intron Retention
Gene
ENSG00000081479 | LRP2
Description
LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:169168539-169169818:-
Coord C1 exon
chr2:169169702-169169818
Coord A exon
chr2:169168677-169169701
Coord C2 exon
chr2:169168539-169168676
Length
1025 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
GTTTTTTTCCCCCATGGCAGCCA
3' ss Score
7.26
Exon sequences
Seq C1 exon
AGATGAGGACCTGCCATCCTGAATATTTTCAGTGTACAAGTGGACATTGTGTACACAGTGAACTGAAATGCGATGGATCCGCTGACTGTTTGGATGCGTCTGATGAAGCTGATTGTC
Seq A exon
GTAAGTCCCTAGACACATATGTAGTACTGCTTACCTGAGAGCATGGATATGATAGTTTAGACATCAGTCCGCTGCCGCTTCTTAGATTAAAAGGCCATAAGTATTGTCTGTTCAGCATGCACTGATAATGATCAGTTCACCTGAGTTCTAAGTCATCATAATCATACATTTCACAATGGCCGTTCAAGTGTACTTCCTTGCTATTTTAAATGGAGAATATATTAAGTAATCTGTGCTAACAAAGTATTTATATATTATCAGCTACTATACAAATCATTAATTAGATAAAAAACATTTCAGGTAAAAAAATATTCAAGCAACGAATACATTAGTATAAAGAACTTGGGTTGGGTATTCGAACATATTGAATTTATAGCATTAAAATTTTTCTCAGTCACACGATGGAGTATAAAAATGATTAAAACTTGAAGGGGGCCAGCCCCTCCACACCTGTAGGTATTTCTCCTCAGGTGGGATGAGAGACTGAGAAGACTGAGAGAGATCAAAATGGAGTTTCTTATGTCTTCCTTTTCTACATAGACACAGTAACTGTCTGATCTTTCTTTTCCCTACAAAAACTGGAAAGCCAACATGATTACTCAGATTTGAGTCTTTATGGATCACTTGAATCAATGCAAACTGTTTATACATCATTATTGCTGATCCATCAACAATAACCATCATCCATGATAACCATCCATGATGGTTATCGTTGATGATGTGGTTGCCAAAGAGACTTTATAAATGTATGTGGGTAAAACCAGTCTTGACATTTGCCTGTAGAGATTAAGTCCAGTGCTGTCCATGCCATGGATGATTCATGCCATTGGAAACTGACTGGGCTCTGACAACTGCCCTTAAGACATAGTCCGTTCAACTTTCAGACAGGTCAAGGCCACTATACATCTTGATGAATAAAGAAGAGCAGGCTATAATGGCAAGAGCCAAAGGAGAAATAGCAGGAAGCTTCCCCAAAGTAGTCAATTTGTATAATAATTTGAATATGTTTTTTTCCCCCATGGCAG
Seq C2 exon
CCACACGCTTTCCTGATGGTGCATACTGCCAGGCTACTATGTTCGAATGCAAAAACCATGTTTGTATCCCGCCATATTGGAAATGTGATGGCGATGATGACTGTGGCGATGGTTCAGATGAAGAACTTCACCTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081479:ENST00000263816:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGGACCTGCCATCC
R:
AGCACAGGTGAAGTTCTTCATCT
Band lengths:
255-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development