HsaINT0097313 @ hg38
Intron Retention
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr9:127451929-127454599:+
Coord C1 exon
chr9:127451929-127452084
Coord A exon
chr9:127452085-127454495
Coord C2 exon
chr9:127454496-127454599
Length
2411 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACTTCTCTCCTGTGCCCCAGGGT
3' ss Score
9.31
Exon sequences
Seq C1 exon
CACCTGCCTTTGAAGGAGACCAGACTCCGGCTCCGCCCGGCCCGTGCCGGGTGGTCTGCGGCCCCGAGTCCGTGACCAAGCCCTCCGAGTGATCGGCCTGCCCTCGGGTGCACCCGCGGGTCCCAACGTGGGGGATCCCTCCATCCGCAAAGCCAG
Seq A exon
GTCAGCCACTGCCCACCCCACCCCAGGAAATATGGGTGTGGCCCTCCCCCCGCATCTAGGCTGGACGTCGGAGAGGGAGGGACAGGCATGTGGGGCAGCCTGGAAAGAACTGATCTTCGGGGAGGGGTGGGAGAGCGATGGTGGTTGGGAGGAAGTGGGGAGGGCTGCACATCAGGAAGGGGGTGCAAGAGGGTTAGTGATTGGGGAGCAGAAGGGTAAGTGCTGGTCATCAGGGACGGATGGGGGAGGGCTGTTTTCAAACCATTCCCCATCCTTGCAGGCAGGTGGGGTGACAAGAGGGCCTGAACTGGCTCTGCAGGCCTGGCTGCCTCCCCAGACAGCCCCGCCCCCGTGGGTGCAGAGCTGCCATCTTTGCCCATCCCTCTGAGGACTGGGTGTATGTCTTCTTCAACTGCATCTCCTCCCATGACTATCTTCTCCCTAGCTCCTCTAGCGGGCCCTGAATCAATGTTGCTTGCATGTGGGTTGCTTTGTGGCTAACATTTATTGAGCGCTCATGTGCCAGGTACTGTACTAGGGGCTTGACATACATGAAGTCGCTGGATCCTCATAGAAGCCAGTGTTGGTAGCATGGTTACTCACACTTTACAGATGAGGAAACTGAGGCTCTGAGAGGTGAACCAAGGTGACCTCTGCAGTTGTGGGTGGCAGATTTCGGATTCAAACCCAGTTCTCTTTTCATCCCAAAGCCTGTGCTGCTCACCATGCACTTCCCTGGGTGATTGCCTCCTGGCTCATTGCCATCCCTTATCCAGCTCTGGTATTTACAGACACTGTGCAGGCCCTGGGCAGGCAGTGAGCACCTGGCTCTGAGTTCAGGACAGTGTACTTCGTGTGTGCCAAGTTATGTGAGCACCAAGCAGTCGGGCAAATCCCATAGGTCAGGACTTGAGAGACCACGGTTCCAGGCTGCAATCCAGGCTGTACAGCCAGGCCACTGAACTTAATAAGCATCTACTTCTTCACTTTATTTATTTATTTATTATTATTTTCTGAGACAGAGACTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCGTTCCTCAGCCTTCCAAGTGGCTGGGACTACAGGCGCATATCACCACGCCCAGCTTCTTTGTGTATTTTTAGTAGAGACGGGGTTTGACCATGTTACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGACCCACCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCGTGTTTCTTCACTTTAAAAAGGGTTATGGTGAGAACAAAATGGAATAATAACGAGGGTGGTAAGCTGAGAATTGCTTTTTAATTTGTATTCACCGCAGAGGTCTCTTTGGTCATGATGTAGTTGAGCTCCCTGAGGTCCTGGCTGGCTCTGGATTGCTCCTGCTGATCCTGCTCTGACAGCGTTTGGGGGGCTAGAAGTGATTCATTGGCAGAGTCTGTTAGAGTCCTCAAAGAACAGCCTTGGAAAGCACCTGAGGAAACGTCTCTAAGTTTCCCTAGAACAGGAAAAGGATAATGCCAAGGCCTCACTATGGGTCGGTGGCAAATATGGGCCCCAACCCAGGTCATCTGGCTTGTCTGTCTCCACCTCATCCTGCTGCTCAATGTTTAGTCAACAAAGAACAAGGAGTACTGAGTGCCTGCTGTGGGCTCAGGACACAGATGGAAGAACTAGAAAGACGCAGCCCCTCACCTCATGGAATTCACTAGAAAGATGTGGCCCCTGACCCCATGGAACTCACTAGAAAGATGTGGCCCCTGCCCCCATGGAACTCCATGAAACTAGGAAGACGCAGTCCCTGGCTCCATGGAACTCGCTAGAAAGACACTGACCCTTACCCCATGGAACTCACTAGAAAGACACAGCCCCTGCCTCCATGGAACTCAATAGAAAGACGCAGCCCCTGCCCCCGTGGAACTCACTAGAAAGACGCAGCCCCTGCCCCCGTGGAACTCACTAGAAAGACGCAGCCCCTGCCCCCGTGGAACTCACTAGAAAGACGCAGCCCCTGCCTCCGTGAAACTCACTAGAAAGACGCTGTCCCTGACCCCGTGGAACTCACTGGAAAGTCGCAGCCTCTGCCCCCGTGGAACTCACTAAAAAGATGCAGCCTCTGCCCCCATGGAACTCACTAGAAAGTTGCTGCCTCCATGGAACTCTCTAGAAAGACCCAGCCGCTGCCTCCGTGGAACTCACTAGGGAGACACAGCCCCTGCCTCCATGGAACTCATGGTCCAGCAGACCAGCTGCATGCTCTGTGTTACTGCACTACCTGTCCCGGGTGTTGGGGGCTGTGACAAATTCCCCAGTCCCTAACTTCTCTCCTGTGCCCCAG
Seq C2 exon
GGTCCTAAAGATCGCTCTGGGAAAAGGGAAGGATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356:ENST00000300417:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development