HsaINT0097326 @ hg19
Intron Retention
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:25135]
Coordinates
chr9:130224531-130230109:+
Coord C1 exon
chr9:130224531-130224652
Coord A exon
chr9:130224653-130230018
Coord C2 exon
chr9:130230019-130230109
Length
5366 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
GGTTACCCTTGTGTCTGCAGATG
3' ss Score
9.21
Exon sequences
Seq C1 exon
ACAACAAGCTGAAGGAGCTTCCAGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACATCAGTGGAAACGAGATCCAGAGATTGCCGCAGATGCTGGCTCACGTTCGAACCCTGGAG
Seq A exon
GTAAATGGGAAGCTGTTCTTGCCTGGGGTGCTCTCTGGCCTGCCCACCTCCCCTCTCTCCCACATTACTGAGTGCTTGCTCTGATCTCACGGTACCAGGGCCACACAGAGATCCCAAGGCATGGTCCTTGGAGGCTTGTAGAGAGGCCAATGTGTGAACATTCGTAATTATATGACTTTTGCTGCCATAATAGAGGCAGAAAAACATACATTAAGAATGAAGAAGAAAGAATGCTGAATCCAGAAGAGGCTGACACTTTAAGAAAGTTGTCGGTAGGGGAACAACACAGTGAGGCCTGTCGGAGGAGGGTGGTGGGGAGGGAGAGCATCAGGAAGAAAAGCTAATGGATGCTGGGCTTCAAACCTGGGTGATGGGACGATCTGTGCAGCAAACCACCGTGGCACATGTTTACCTTTGTAACAAACCTGCACGTGCTGCACATGTACTCCTGAGCTTAAAAGTTGCAGAAGAAAAAAAAAGTTAAAAAAAAAAAAAGTTGTGATATTCAAGCCAGACCTTAAAGGAGGAATAAGATTTCTGGGCTGGGCACCGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAGGTGGATCACTTGAGGTTAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAGAAATTATCCAGGCGTGGTGGTGCGCACCTGTAATCCCAGCTACTCGGGGGAGGCTGAGACAGGAGAATTGCTTGAACCCGGGAGGCGGAGATTGCAGTGAGCCGAGATTGCGCCATTGCATTCCAGCCTGGACAACAAAGCAAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAATTCTGAGCAGACCTGGATAACAGGGGCAGCCCAGGTGCAGGAGGCAGGTGGTGGGAAGCACAGATTGTCTCAGGGAGGGTCGAGGAAGTGATGTGGTTGGAAGCTGCTGAGCTTGTGTGATATGGGGCCCAGAAAGCTGGGAGGGAGAGAAGGAGGTAGGGAGCCGTTGGGATGGGGGTTCAGAATTATCCAGGCCAGGGGAGTTCTATAGGCTAGAAGTCCAAGATCAAGGTGTTGGCAGGGTTGGTGACTTCTGAGGCCTCCCTCCTTGGCTTGTAGGTGCTGTCTTCCCTCCCTGTGTCTTCACCTCATCTTCCCTGTGTACATGTCCGGGTCCAAATTCCCTCCTCTTAGAAGCACACCAGTCACATTGGATTAGGGCCCAGCCTAATGACCCCTTTTTAACTTAATTACCTCCTTAAAGATGCTATCTCCACATACAGCCACATTCTGAGGGATGGGGGGATTAGGATTTCCACATAGGAACTTGGGAGGGGGACATAGTTCAGCCCATGACAGACACTGACAGAGGCAGCTGCTCACGGAAAGCAGCTCTCACAGTCATGCTAATGAGGTAGCTCACCTTTATCTGGGGCTTTCTAAGACTGGGCATAACCTGGAATCGCTCCGTGTATCGTCACAGAACTCTTGTGAGGCAGATACTATTGTGCTACTTTGTAGATGAAGAAACTGAGGCACAGGCAGTTTAAGAAACTTGCCCAAGGGCCACACAGTCACTGACAGCAGAGATCGTTGTAAACCAGGCCGTCTGAAGCTGACGCCTGTGCTCCCCACCTCTGTATGACTCGGCTTCTGGAACAGGGACTTCTCCATTCATGGTGGCACGCAGTCTGGCCAGCATTCCGGAGTGGCCTGGAGTTGACCCCACTCTCAGCCAGCCCAGCCTGCTGAGCAGAGGTGTCTGTGTCAGAGTGGGTGGGTGATCACAGAGACAGCAGAGGAAGGACTGACCTCAGCAGCTGGGGCCCTCCTGCCTGAGAAAGGGCCGGCTGGGGAGATGGGCCAACATGGCTTGTCCTCTCTGCTGCCTACTGGAACTTTCTGCAATGATGGAAATGTTCAGTGACCGTGCTGTCCAGAGCGGCAGCCACTGGCCATGTGTATCTAATGAGCACCTGGTGACCGTGCTGTCCAGAGCGGCGGCCACTGGCCACGTGTATCTATTGAGCACCTGGAGACCGTGCTGTCCAGAGCGGCAGCCGCTGGCCATATGTATCTATGGAGCACCTGGAATGTGGCTTGTGTGTACAGCCAGGAACTAAAAGTTTGATTTCATTGAATTTTAATTAATTTATATTTAAATAGCCGTGGGTCCTTAGTGGCTACCATTTTAGACAATACAGCTCAGAGCACGTTCCCAATCCTGAAGCCATCTCGACATCTAGTATGAGTTCTGGACACTTCAATTTTTTTTTCTTTGAGACAGGCTCTCATGCTGTCACCCAGGCTGGAGTGCAGTGGCTCAATCATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGAGATCCTCCTCCTCAGCCTCCCAAGAGACTGGGACCACAGGTGTACCCCATCACTCTTGGCTAATTTTTTTATTTTTTGTAGAGATGAGGTCCCACTATGTTGCCCAGCCTGGTCTCAAAGTCTTGGGCTCAAGCAATCCTCCCGCCTTGACTCCCAAGTAGGTGGGATTACAGGTGTGAGCCACCACACCCAACCTGGACACTTCATTTTATTTTGATTCCTTTAAAAAAAATCTTTTGGGTTTCTTGGTGGCACCTCGGACAAACCTTCTTTTAGGATGAGATAACCGTTCTGAGTTCAGGCCGTACTGTGGGCAAGATCTTCAGGTGTCACGCACGCCACCCACCAAACAGCCCACCAGGTCGGTAACACTGCCTGTTTGGCTATGAGGAGACCACAGCCCCAGGACACTAAGGGGCCTGATTAAGCAAACACATGGCCAGCATGCAATGAGCCGGGATCTGAAGCCATGGCGGTGTCTTTGGCACAGCAATGTCCAGTCACTGCTCCTGCTGCCCACGATGAGAATGCTCTATGATCTGTGCAGCCAACATGGCCACCCCAGCCACTTGTAGCTGCTGGGCCCTTGAAATGTGGTGACTGCAACCAACCATGGACTCAAACTTTAAATCAGATTTATTTTCAGTTACTTAAAATGTAACCATAAATGGCCACACATGGCTTGTAGCCAGCATCCTGGTATAGCCCACAGTCCGTGCCCTTAAGCCACCACGCTTTACTGATGGTGACTAAGAGCACCCATGTGGGGTTCATTTGCTTCCAGGTATGGGGTTTTCTGCTGTTGGGCCCTCAGCATCTGGGCGGTCAGTTCCTCTTCCCTGGGGCAGTCTCCCACTCCCTGTGCAAAGCACGTTCACTCAACACCCACCGTGTGAGGGCTGGGCTGGCCAGGGCTGGGGGACCTGAGCTACCCTTCCCACCCAGCCACTTGTGTTACAGCAAAATCAGAGCTTCCCAGGCCTTCTCCTTTTCCAGGACTCCCCTGATACCCAGGCATAGAGGATATCAGTGCCTGCCAGCACTCTGGGATGAGAGGGCCTGTGGGAAGTCAGAGGTTGGCAGCGGGAGGGCAGGGTCCAACACAACTCACACCGTGGATGGGGCAGTTCTGTGGCTGTGAGCTGAGGCCCCTGCTTCCTGGGCTTCATAAACACGGAGGCATCTGCATGTGTGCGCTGATAAACATTTGTCATTACATAATTTAAAAGTCATACTGTATATTGTAAAACAAAAAAAATGCAAATATTAAGAAACATTTCTGCCAGGCACAGTGGCTCAAGCTTGTAATCCTAGCACTTTGGGAAGACGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCATGCCTATAGTTCCAGCTACTCGGGAGGCTGAGGCAAGAGAATTGCTTGAACTGGGGAGGCAAAGGTTGCAATGAGCTGAGATCACACCACTGCACTCCAGCCTGCCACACAGCAAGACTCTGTCTCAAAAAATAGTAATAATAATAGCATTTCATGTAGATAGTAACCCAAAATCTCCTTTTAGAGGAAACCACTTTTAGTTTGATAGATATCCCTCCAATTTTTTTCTATAAAATATGAATGTGAAAGTGTATGAATATATTATATGAATATATTATCTAACAAAGGAAGAATCATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTCCACTAGAGATGGGGTCTCGCTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTGAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCTGGGATTACACGCATGAGCCACCACACCCAGCCAGTGGAATCATATTCTATATGCTGTCCTATAACTTCCTTTTTTTCACTCACTTATGTATTTATCCAAAGTGAACTGAGAGGCTGGGTGTATGACTCACACCTGTAATTCCAGCACTTTGGGAGGCGGGCGAATTGCTTGGGCCCAAGACTTTGAGACTAGCCTGGGTAACATAGTAGGACTTTATCTCTACAAAAAATACAAAAATTAGGCATGGTGGCATGTGCTTATAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTGCTTAAACCTGGGGAGGTCGAGACTGCAGTGTTCGTGCCACTGCACTCCAGTCTGGGCAATGGGAATGAGACCCTGTCTCAGAAAAATGTAAAAAAGTGCTTGCTGCTGTTGTAACCAAGCGAGTTATAGAGAAACACCACACTTTGAGACAAATTGAGGAGTCCTTTATTAGCTGGCAACCGAGAGGCAGCTAATGCTCAAAATTCTCTTGGCCCTGAGGAAGGGGCTAGTTTTGTTTTTATACTGTGGTCTAAATAGGGGAGGGGGGAGTTTAGCTGAAGCAATTTTTACAGAAGCAGAACTGGCAAAAAGTTAAAAAATTAATTGGTTACAAAAGCAGTTACAAAAAATAAACAGTTCCAGGTGCAGGGGCTTAAACTATCACAAAGGGATAAATGCAGGGGCTTTATGTGCCATCCACTGCGCGTGTCCCCAGGAGCTGCTGGTGCAGCTCACCTCAATATCTTATCAGTAAGTGCATTCCTGGATGTGCTTTGAGTCAGTTTACACTAGTTATGCCCTTAAGGGAGGGAGGGAAGGGGGCTGCAGGTGAAGAAACTAAAATGGAGTCTGTCCGGCTCTCTCTCTGCTAGGAGAGAGTCACTCAGGTTAAAACAAGGTAGGGCATCACACTGCCTGCCTACAGTCATCCCAGGCACTGGGAACGCAGCTGTAAGTAACAAGACAGTTCAGCCACCTCTGCTGTCAGGCCATTCCTGCTGGGTAGAGGTGACAGAGAACACACAAATTGATAAGGAAATCGTGTGGTCTCCGGTTGCGTTGGTAGCGAACAGTAAAGCGGGTTACCCTTGTGTCTGCAG
Seq C2 exon
ATGCTGAGCCTTGACGCCTCGGCCATGGTCTACCCGCCGCGGGAGGTGTGTGGTGCCGGCACTGCGGCCATCTTGCAGTTCCTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356-LRSAM1:NM_001005373:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(77.8=85.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)