HsaINT0097595 @ hg19
Intron Retention
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:6716]
Coordinates
chr11:65319019-65319628:-
Coord C1 exon
chr11:65319443-65319628
Coord A exon
chr11:65319036-65319442
Coord C2 exon
chr11:65319019-65319035
Length
407 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTAG
5' ss Score
-2.05
3' ss Seq
CCCATCTTCTTCCCTTTTAGGGG
3' ss Score
12.15
Exon sequences
Seq C1 exon
CTGCGTTCAAGGAGATCTGCCCAGCTGGGAAGGGATACCACATTCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAGAGTGACTTTTCCCTTTTCCTGCACCCTGACGGGCCACCCAAGCCCCAGCAGCTTCCGGAGAGCCCTAGCCAGGCTCCACCACCTGAGGACACAGAGGAAGAGAGAG
Seq A exon
GTCTAGCCTGACCCCTTCTGATCCCTGACCCATGCCAAGCCCCTAGGCCTGACCCCTTGACCCGTGATCCACAGATCTGACCTCACAGTCTAACCCCCAATTCCTTATCCCTGACCCATCCACTGACCTCCCACCTGACCCTCTGACCCCTGACCCAGATATTTGACCCTGAGCTATAACCTCCTAAGCCTTCTACAGCCTGACCTGTAACCCAAGGCCATTCAACCTGATCATGTGACTACTATGCAAACACACCCTAACCCCAGAATCTAACCCCTGACCCTTGACCTGGAGACATGATTGTTGAACTCCCAGAGACCCTAACTGCAAATACTCAGCTGCTGATCCCAGATCTGACTCCCTTCTCCCGCCCCAACACTTCATGGCCCCATCTTCTTCCCTTTTAG
Seq C2 exon
GGGTGACCACGGACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-LTBP3:NM_001130144:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=7.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)