MmuINT0093746 @ mm10
Intron Retention
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5747671-5748591:+
Coord C1 exon
chr19:5747671-5747856
Coord A exon
chr19:5747857-5748574
Coord C2 exon
chr19:5748575-5748591
Length
718 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
3' ss Seq
TATTCCACCTTCTCTTTTAGGAG
3' ss Score
10.24
Exon sequences
Seq C1 exon
CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG
Seq A exon
GTCTGGCTTGATCCAATAATTCCAGATCCACAGATAAAACTCAGGGGCTAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAAGACTCATGGGCTAAGGCAGTGGTTTGAAACCTGTAGGTTGGAACCCCTGGGGGCAGGGGGTGTCACATATCAGATATCCTGCCTATCAGATATTTACATTAGGACTCAGAACAGTAGCAAAATTACAGTTATGAAGTAGCAATTAGATGATTTTATGGCTGGGGAGTCATCACAACATGAGGAACTGTAGAAAAGGGGTGGCACTGGGAAGGTTGAGAACCACTGCTCTAACATGTAAATCCCTAGCCTGAACACTGACACCCTCCACCCCAGGCCTTATTTATTCCCTTGCCCTCACCTTACCTGACCTGAGCTGTCGCCTCCTAGGCTGGCACTGTACAGATCGAGCTTAACTGCTGCACTCTAGGCAATGGCTACTACGCAAATGACCCTAATCCCAGGATCTGAGCTTTGAGCCTTGATGCAAAGGCCTGCCTTTTGAACGCTGAGACCTACCCTACCTATATACACCTTGATCCTTGACCTCCTGTTCTGACATAAATAATATTCCACCTTCTCTTTTAG
Seq C2 exon
GAGTGACCATGGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940:ENSMUST00000081496:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=7.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types