HsaINT0099946 @ hg38
Intron Retention
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:118977471-118977935:+
Coord C1 exon
chr2:118977471-118977515
Coord A exon
chr2:118977516-118977827
Coord C2 exon
chr2:118977828-118977935
Length
312 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
ACCAGCCATTCTCTTTGCAGGCA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GCCTCCAAGGACCCCAGGGTGCTCCAGGGAAGCAAGGAGCCACTG
Seq A exon
GTAACTTGTACTTGCTCTGCTAGGGACAAATGATGCATAGCCTGAGGCACTGAGGCAGTTCCCCCCCACCCCCCATCCTCTTTCCACAGCCCCACCCCAGCCCCTGACAGTTACTGCCCACCCTACAGTCCTCTTCTCTTGAGTCCTGTCACATTTCTTCAAGACCACCCAAGAAATGAGCTAGCACATCCCCCAGAGGAAATCTGGGGATCCCATTCCCTTCTCTCCCAAATGCTTCCTGCCCCTTTGCCTCTGGTAGCCTGTCCCCAAAAGGATAGTGGGAGCCCATCTCACCAGCCATTCTCTTTGCAG
Seq C2 exon
GCACCCCAGGACCCCAAGGAGAGAAGGGCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGGGAAACTGGAACTAAGGGAGAGAAAGGAGACCTGGGTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169:ENST00000327097:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.8=100)
A:
NA
C2:
PF0139113=Collagen=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development