MmuINT0095844 @ mm9
Intron Retention
Gene
ENSMUSG00000026390 | Marco
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:122384724-122385153:-
Coord C1 exon
chr1:122385109-122385153
Coord A exon
chr1:122384832-122385108
Coord C2 exon
chr1:122384724-122384831
Length
277 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
CACCTCTGTTCTCATCACAGGTG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCCTCCAGGGACTTACGGGTGCACCAGGGAAGCAAGGAGCAACTG
Seq A exon
GTAACTTGGGCTTCCTCTCCTGGGACAACCAATGCACTACCAATGCCTATGGGGCAGCTGTCCCCACAAGTTCTCTCTATAGCTCCACCCTGGCCCTGAGGGTAAATGCCTTCCGACTCTCCTTTTCCCCCACAAGTTTTCAAAGAGCTCACCAAGACCACCCAAGAGATGAGCTAATGGACGTGTGCCCTAGACCTTCCCTGGAGACCCCTTCCCTTCCACTCTGAGGAACCCGTCCTCACTAGGACAATGGCACTCACCTCTGTTCTCATCACAG
Seq C2 exon
GTGCTCCAGGACCTCGAGGAGAGAAGGGCAGCAAAGGTGACATAGGTCTCACTGGCCCCAAGGGGGAACATGGCACCAAGGGAGACAAAGGGGACCTAGGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390-Marco:NM_010766:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.7=25.0),PF0139113=Collagen=FE(20.0=100)
A:
NA
C2:
PF0139113=Collagen=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGGGACTTACGGGTG
R:
AAGGCCTAGGTCCCCTTTGTC
Band lengths:
148-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: